2011 PUBLICATIONS
Marshel, J.H., Garrett, M.E., Nauhaus, I., Callaway, E.M. Functional specialization of seven mouse visual cortical areas. (2011) Neuron. 72(6):1040-1054. DOI: 10.1016/j.neuron.2011.12.004
Mu, Y., Gage, F.H. Adult hippocampal neurogenesis and its role in Alzheimer's disease. (2011) Mol Neurodegener. 6:85. DOI: 10.1186/1750-1326-6-85
Volman, V., Behrens, M.M., Sejnowski, T.J. Downregulation of parvalbumin at cortical GABA synapses reduces network gamma oscillatory activity. (2011) Journal of Neuroscience. 31(49):18137-48. DOI: 10.1523/JNEUROSCI.3041-11.2011
Coufal, N.G., Garcia-Perez, J.L., Peng, G.E., Marchetto, M.C., Muotri, A.R., Mu, Y., Carson, C.T., Macia, A., Moran, J.V., Gage, F.H. Ataxia telangiectasia mutated (ATM) modulates long interspersed element-1 (L1) retrotransposition in human neural stem cells. (2011) Proceedings of the National Academy of Sciences of the United States of America. 108(51):20382-7. DOI: 10.1073/pnas.1100273108
Coggan, J.S., Ocker, G.K., Sejnowski, T.J., Prescott, S.A. Explaining pathological changes in axonal excitability through dynamical analysis of conductance-based models. (2011) J Neural Eng. 8(6):065002. DOI: 10.1088/1741-2560/8/6/065002
Brennand, K.J., Gage, F.H. Concise review: the promise of human induced pluripotent stem cell-based studies of schizophrenia. (2011) Stem Cells. 29(12):1915-22. DOI: 10.1002/stem.762
Choi, J., Callaway, E.M. Monosynaptic inputs to ErbB4-expressing inhibitory neurons in mouse primary somatosensory cortex. (2011) Journal of Comparative Neurology. 519(17):3402-3414. DOI: 10.1002/cne.22680
Kuwabara, T., Kagalwala, M.N., Onuma, Y., Ito, Y., Warashina, M., Terashima, K., Sanosaka, T., Nakashima, K., Gage, F.H., Asashima, M. Insulin biosynthesis in neuronal progenitors derived from adult hippocampus and the olfactory bulb. (2011) EMBO Molecular Medicine. 3(12):742-54. DOI: 10.1002/emmm.201100177
Tremblay, M., Stevens, B., Sierra, A., Wake, H., Bessis, A., Nimmerjahn, A. The role of microglia in the healthy brain. (2011) Journal of Neuroscience. 31(45):16064-9. DOI: 10.1523/JNEUROSCI.4158-11.2011
Wei, H., Bonjean, M., Petry, H.M., Sejnowski, T.J., Bickford, M.E. Thalamic burst firing propensity: a comparison of the dorsal lateral geniculate and pulvinar nuclei in the tree shrew. (2011) Journal of Neuroscience. 31(47):17287-17299. DOI: 10.1523/JNEUROSCI.6431-10.2011
Brenner, S., Sejnowski, T.J. Understanding the human brain. (2011) Science. 334(6056):567. DOI: 10.1126/science.1215674
Fitzgerald, J.D., Rowekamp, R.J., Sincich, L.C., Sharpee, T.O. Second order dimensionality reduction using minimum and maximum mutual information models. (2011) PLOS Computational Biology. 7(10):e1002249. DOI: 10.1371/journal.pcbi.1002249
Bai, G., Pfaff, S.L. Protease regulation: the Yin and Yang of neural development and disease. (2011) Neuron. 72(1):9-21. DOI: 10.1016/j.neuron.2011.09.012
Kawakami, Y., Marti, M., Kawakami, H., Itou, J., Quach, T., Johnson, A., Sahara, S., O'Leary, D.D., Nakagawa, Y., Lewandoski, M., Pfaff, S., Evans, S.M., Izpisua Belmonte, J.C. Islet1-mediated activation of the β-catenin pathway is necessary for hindlimb initiation in mice. (2011) Development. 138(20):4465-73. DOI: 10.1242/dev.065359
Marchetto, M.C., Brennand, K.J., Boyer, L.F., Gage, F.H. Induced pluripotent stem cells (iPSCs) and neurological disease modeling: progress and promises. (2011) Human Molecular Genetics. 20(R2):R109-15. DOI: 10.1093/hmg/ddr336
Volman, V., Sejnowski, T.J., Bazhenov, M. Topological basis of epileptogenesis in a model of severe cortical trauma. (2011) Journal of Neurophysiology. 106(4):1933-1942. DOI: 10.1152/jn.00458.2011
Sharpee, T.O., Nagel, K.I., Doupe, A.J. Two-dimensional adaptation in the auditory forebrain. (2011) Journal of Neurophysiology. 106(4):1841-61. DOI: 10.1152/jn.00905.2010
Sharpee, T.O., Atencio, C.A., Schreiner, C.E. Hierarchical representations in the auditory cortex. (2011) Current Opinion in Neurobiology. 21(5):761-7. DOI: 10.1016/j.conb.2011.05.027
Hester, M.E., Murtha, M.J., Song, S., Rao, M., Miranda, C.J., Meyer, K., Tian, J., Boulting, G., Schaffer, D.V., Zhu, M.X., Pfaff, S.L., Gage, F.H., Kaspar, B.K. Rapid and efficient generation of functional motor neurons from human pluripotent stem cells using gene delivered transcription factor codes. (2011) Mol. Ther. 19(10):1905-12. DOI: 10.1038/mt.2011.135
Yu, T., Sejnowski, T.J., Cauwenberghs, G. Biophysical Neural Spiking, Bursting, and Excitability Dynamics in Reconfigurable Analog VLSI. (2011) IEEE Trans Biomed Circuits Syst. 5(5):420-429. DOI: 10.1109/TBCAS.2011.2169794
Zhu, Q., Pao, G.M., Huynh, A.M., Suh, H., Tonnu, N., Nederlof, P.M., Gage, F.H., Verma, I.M. BRCA1 tumour suppression occurs via heterochromatin-mediated silencing. (2011) Nature. 477(7363):179-84. DOI: 10.1038/nature10371
Volman, V., Bazhenov, M., Sejnowski, T.J. Pattern of trauma determines the threshold for epileptic activity in a model of cortical deafferentation. (2011) Proceedings of the National Academy of Sciences of the United States of America. 108(37):15402-15407. DOI: 10.1073/pnas.1112066108
Ghosh, K.K., Burns, L.D., Cocker, E.D., Nimmerjahn, A., Ziv, Y., Gamal, A.E., Schnitzer, M.J. Miniaturized integration of a fluorescence microscope. (2011) Nature Methods. 8(10):871-8. DOI: 10.1038/nmeth.1694
Dang-Vu, T.T., Bonjean, M., Schabus, M., Boly, M., Darsaud, A., Desseilles, M., Degueldre, C., Balteau, E., Phillips, C., Luxen, A., Sejnowski, T.J., Maquet, P. Interplay between spontaneous and induced brain activity during human non-rapid eye movement sleep. (2011) Proceedings of the National Academy of Sciences of the United States of America. 108(37):15438-15443. DOI: 10.1073/pnas.1112503108
Toups, J.V., Fellous, J.M., Thomas, P.J., Sejnowski, T.J., Tiesinga, P.H. Finding the event structure of neuronal spike trains. (2011) Neural Computation. 23(9):2169-2208. DOI: 10.1162/NECO_a_00173
Osakada, F., Mori, T., Cetin, A.H., Marshel, J.H., Virgen, B., Callaway, E.M. New rabies virus variants for monitoring and manipulating activity and gene expression in defined neural circuits. (2011) Neuron. 71(4):617-631. DOI: 10.1016/j.neuron.2011.07.005
Shen, B., Xiang, Z., Miller, B., Louie, G., Wang, W., Noel, J.P., Gage, F.H., Wang, L. Genetically encoding unnatural amino acids in neural stem cells and optically reporting voltage-sensitive domain changes in differentiated neurons. (2011) Stem Cells. 29(8):1231-40. DOI: 10.1002/stem.679
Rowekamp, R.J., Sharpee, T.O. Analyzing multicomponent receptive fields from neural responses to natural stimuli. (2011) Network. 22(1-4):45-73. DOI: 10.3109/0954898X.2011.566303
Alaynick, W.A., Jessell, T.M., Pfaff, S.L. SnapShot: spinal cord development. (2011) Cell. 146(1):178-178.e1. DOI: 10.1016/j.cell.2011.06.038
Talamas, J.A., Hetzer, M.W. POM121 and Sun1 play a role in early steps of interphase NPC assembly. (2011) Journal of Cell Biology. 194(1):27-37. DOI: 10.1083/jcb.201012154
Woods, N.B., Parker, A.S., Moraghebi, R., Lutz, M.K., Firth, A.L., Brennand, K.J., Berggren, W.T., Raya, A., Izpisúa Belmonte, J.C., Gage, F.H., Verma, I.M. Brief report: efficient generation of hematopoietic precursors and progenitors from human pluripotent stem cell lines. (2011) Stem Cells. 29(7):1158-64. DOI: 10.1002/stem.657
Liang, X., Song, M.R., Xu, Z., Lanuza, G.M., Liu, Y., Zhuang, T., Chen, Y., Pfaff, S.L., Evans, S.M., Sun, Y. Isl1 is required for multiple aspects of motor neuron development. (2011) Molecular and Cellular Neurosciences. 47(3):215-22. DOI: 10.1016/j.mcn.2011.04.007
Bonjean, M., Baker, T., Lemieux, M., Timofeev, I., Sejnowski, T., Bazhenov, M. Corticothalamic feedback controls sleep spindle duration in vivo. (2011) Journal of Neuroscience. 31(25):9124-9134. DOI: 10.1523/JNEUROSCI.0077-11.2011
Hetzer, M., Cavalli, G. Eukaryotic cells. (2011) Current Opinion in Cell Biology. 23(3):255-7. DOI: 10.1016/j.ceb.2011.04.013
Aimone, J.B., Deng, W., Gage, F.H. Resolving new memories: a critical look at the dentate gyrus, adult neurogenesis, and pattern separation. (2011) Neuron. 70(4):589-96. DOI: 10.1016/j.neuron.2011.05.010
Callaway, E.M., Borrell, V. Developmental sculpting of dendritic morphology of layer 4 neurons in visual cortex: influence of retinal input. (2011) Journal of Neuroscience. 31(20):7456-7470. DOI: 10.1523/JNEUROSCI.5222-10.2011
Brennand, K.J., Simone, A., Jou, J., Gelboin-Burkhart, C., Tran, N., Sangar, S., Li, Y., Mu, Y., Chen, G., Yu, D., McCarthy, S., Sebat, J., Gage, F.H. Modelling schizophrenia using human induced pluripotent stem cells. (2011) Nature. 473(7346):221-5. DOI: 10.1038/nature09915
Bruno, I.G., Karam, R., Huang, L., Bhardwaj, A., Lou, C.H., Shum, E.Y., Song, H.W., Corbett, M.A., Gifford, W.D., Gecz, J., Pfaff, S.L., Wilkinson, M.F. Identification of a microRNA that activates gene expression by repressing nonsense-mediated RNA decay. (2011) Molecular Cell. 42(4):500-10. DOI: 10.1016/j.molcel.2011.04.018
Miyamichi, K., Amat, F., Moussavi, F., Wang, C., Wickersham, I., Wall, N.R., Taniguchi, H., Tasic, B., Huang, Z.J., He, Z., Callaway, E.M., Horowitz, M.A., Luo, L. Cortical representations of olfactory input by trans-synaptic tracing. (2011) Nature. 472(7342):191-196. DOI: 10.1038/nature09714
Fitzgerald, J.D., Sincich, L.C., Sharpee, T.O. Minimal models of multidimensional computations. (2011) PLOS Computational Biology. 7(3):e1001111. DOI: 10.1371/journal.pcbi.1001111
Mu, Y., Zhao, C., Gage, F.H. Dopaminergic modulation of cortical inputs during maturation of adult-born dentate granule cells. (2011) Journal of Neuroscience. 31(11):4113-23. DOI: 10.1523/JNEUROSCI.4913-10.2011
Aimone, J.B., Gage, F.H. Modeling new neuron function: a history of using computational neuroscience to study adult neurogenesis. (2011) European Journal of Neuroscience. 33(6):1160-9. DOI: 10.1111/j.1460-9568.2011.07615.x
Winner, B., Kohl, Z., Gage, F.H. Neurodegenerative disease and adult neurogenesis. (2011) Eur. J. Neurosci. 33(6):1139-51. DOI: 10.1111/j.1460-9568.2011.07613.x
Macfarlan, T.S., Gifford, W.D., Agarwal, S., Driscoll, S., Lettieri, K., Wang, J., Andrews, S.E., Franco, L., Rosenfeld, M.G., Ren, B., Pfaff, S.L. Endogenous retroviruses and neighboring genes are coordinately repressed by LSD1/KDM1A. (2011) Genes & Development. 25(6):594-607. DOI: 10.1101/gad.2008511
Winner, B., Jappelli, R., Maji, S.K., Desplats, P.A., Boyer, L., Aigner, S., Hetzer, C., Loher, T., Vilar, M., Campioni, S., Tzitzilonis, C., Soragni, A., Jessberger, S., Mira, H., Consiglio, A., Pham, E., Masliah, E., Gage, F.H., Riek, R. In vivo demonstration that alpha-synuclein oligomers are toxic. (2011) Proceedings of the National Academy of Sciences of the United States of America. 108(10):4194-9. DOI: 10.1073/pnas.1100976108
Winner, B., Melrose, H.L., Zhao, C., Hinkle, K.M., Yue, M., Kent, C., Braithwaite, A.T., Ogholikhan, S., Aigner, R., Winkler, J., Farrer, M.J., Gage, F.H. Adult neurogenesis and neurite outgrowth are impaired in LRRK2 G2019S mice. (2011) Neurobiol. Dis. 41(3):706-16. DOI: 10.1016/j.nbd.2010.12.008
Romani, S., Sejnowski, T.J., Tsodyks, M. Intracellular dynamics of virtual place cells. (2011) Neural Computation. 23(3):651-5. DOI: 10.1162/NECO_a_00087
Yuan, S.H., Martin, J., Elia, J., Flippin, J., Paramban, R.I., Hefferan, M.P., Vidal, J.G., Mu, Y., Killian, R.L., Israel, M.A., Emre, N., Marsala, S., Marsala, M., Gage, F.H., Goldstein, L.S., Carson, C.T. Cell-surface marker signatures for the isolation of neural stem cells, glia and neurons derived from human pluripotent stem cells. (2011) PLOS One. 6(3):e17540. DOI: 10.1371/journal.pone.0017540
Garudadri, S., Gallarda, B., Pfaff, S., Alaynick, W. Spinal cord electrophysiology II: extracellular suction electrode fabrication. (2011) J Vis Exp.(48) DOI: 10.3791/2580
Liang, Y., Hetzer, M.W. Functional interactions between nucleoporins and chromatin. (2011) Current Opinion in Cell Biology. 23(1):65-70. DOI: 10.1016/j.ceb.2010.09.008
Jeanne, J.M., Thompson, J.V., Sharpee, T.O., Gentner, T.Q. Emergence of learned categorical representations within an auditory forebrain circuit. (2011) Journal of Neuroscience. 31(7):2595-606. DOI: 10.1523/JNEUROSCI.3930-10.2011
Kim, J.E., O'Sullivan, M.L., Sanchez, C.A., Hwang, M., Israel, M.A., Brennand, K., Deerinck, T.J., Goldstein, L.S., Gage, F.H., Ellisman, M.H., Ghosh, A. Investigating synapse formation and function using human pluripotent stem cell-derived neurons. (2011) Proceedings of the National Academy of Sciences of the United States of America. 108(7):3005-10. DOI: 10.1073/pnas.1007753108
Bai, G., Chivatakarn, O., Bonanomi, D., Lettieri, K., Franco, L., Xia, C., Stein, E., Ma, L., Lewcock, J.W., Pfaff, S.L. Presenilin-dependent receptor processing is required for axon guidance. (2011) Cell. 144(1):106-18. DOI: 10.1016/j.cell.2010.11.053
Meng, X., Arocena, M., Penninger, J., Gage, F.H., Zhao, M., Song, B. PI3K mediated electrotaxis of embryonic and adult neural progenitor cells in the presence of growth factors. (2011) Exp. Neurol. 227(1):210-7. DOI: 10.1016/j.expneurol.2010.11.002
Peterson, D.A., Lotz, D.T., Halgren, E., Sejnowski, T.J., Poizner, H. Choice modulates the neural dynamics of prediction error processing during rewarded learning. (2011) Neuroimage. 54(2):1385-1394. DOI: 10.1016/j.neuroimage.2010.09.051
Manor, U., Disanza, A., Grati, M., Andrade, L., Lin, H., Di Fiore, P.P., Scita, G., Kachar, B. Regulation of stereocilia length by myosin XVa and whirlin depends on the actin-regulatory protein Eps8. (2011) Current Biology. 21(2):167-172. DOI: 10.1016/j.cub.2010.12.046
