John Reynolds, PhD

Professor

Systems Neurobiology Laboratory

Fiona and Sanjay Jha Chair in Neuroscience

John Reynolds
Salk Institute for Biological Studies - Publications

all Publications


Morton, M.P., Denagamage, S., Blume, I.J., Reynolds, J.H., Jadi, M.P., Nandy, A.S. (2024) eLife reviewed preprint. DOI: https://doi.org/10.7554/eLife.91722.3

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Davis, Z.W., Busch, A., Steward, C., Muller, L., Reynolds, J. Horizontal cortical connections shape intrinsic traveling waves into feature-selective motifs that regulate perceptual sensitivity. (2024) Cell Reports. 43(9):114707. DOI: 10.1016/j.celrep.2024.114707

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Dotson, N.M., Davis, Z.W., Jendritza, P., Reynolds, J.H. Acute Neuropixels recordings in the marmoset monkey. (2024) eNeuro. DOI: 10.1523/ENEURO.0544-23.2024

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Franken, T.P., Reynolds, J.H. Grouping cells in primate visual cortex. (2024) bioRxiv. DOI: 10.1101/2024.01.16.575953

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Sanzeni, A., Palmigiano, A., Nguyen, T.H., Luo, J., Nassi, J.J., Reynolds, J.H., Histed, M.H., Miller, K.D., Brunel, N. Mechanisms underlying reshuffling of visual responses by optogenetic stimulation in mice and monkeys. (2023) Neuron. DOI: 10.1016/j.neuron.2023.09.018

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Dotson, N.M., Davis, Z.W., Salisbury, J.M., Palmer, S.E., Cavanagh, P., Reynolds, J.H. The double-drift illusion biases the marmoset oculomotor system. (2023) Journal of Vision. 23(10):4. DOI: 10.1167/jov.23.10.4

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Vanderlip, C.R., Asch, P.A., Reynolds, J.H., Glavis-Bloom, C. Domain-specific cognitive impairment reflects prefrontal dysfunction in aged common marmosets. (2023) eNeuro. DOI: 10.1523/ENEURO.0187-23.2023

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Benigno, B., Budzinski, C., Davis, Z.W., Reynolds, J.H., Muller, L. Waves traveling over a map of visual space can ignite short-term predictions of sensory input (2023) Nature Communications. 14(1):3409. DOI: 10.1038/s41467-023-39076-2

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Denagamage, S., Morton, M.P., Hudson, N.V., Reynolds, J.H., Jadi, M.P., Nandy, A.S. Laminar mechanisms of saccadic suppression in primate visual cortex. (2023) Cell Reports. 42(7):112720. DOI: 10.1016/j.celrep.2023.112720

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Glavis-Bloom, C., Vanderlip, C., Weiser Novak, S., Kuwajima, M., Kirk, L., Harris, K.M., Manor, U., Reynolds, J.H. Violation of the ultrastructural size principle in the dorsolateral prefrontal cortex underlies working memory impairment in the aged common marmoset (Callithrix jacchus) (2023) Frontiers in Aging Neuroscience. 15. DOI: doi.org/10.3389/fnagi.2023.1146245

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Davis, Z.W., Dotson, N.M., Franken, T.P., Muller, L., Reynolds, J.H. Spike-phase coupling patterns reveal laminar identity in primate cortex. (2023) Elife. 12. DOI: 10.7554/eLife.84512

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Glavis-Bloom, C., Vanderlip, C.R., Reynolds, J.H. Age-related learning and working memory impairment in the common marmoset. (2022) Journal of Neuroscience. DOI: 10.1523/JNEUROSCI.0985-22.2022

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Davis, Z.W., Muller, L., Reynolds, J.H. Spontaneous Spiking Is Governed By Broadband Fluctuations. (2022) Journal of Neuroscience. DOI: 10.1523/JNEUROSCI.1899-21.2022

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Franken, T.P., Reynolds, J.H. Columnar processing of border ownership in primate visual cortex. (2021) Elife. 10. DOI: 10.7554/eLife.72573

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Davis, Z.W., Benigno, G.B., Fletterman, C., Desbordes, T., Steward, C., Sejnowski, T.J., Reynolds, J.H., Muller, L. Spontaneous traveling waves naturally emerge from horizontal fiber time delays and travel through locally asynchronous-irregular states. (2021) Nature Communications. 12(1):6057. DOI: 10.1038/s41467-021-26175-1

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Davis, W., Muller, L., Martinez-Trujillo, J., Sejnowski, T., Reynolds, J.H. Spontaneous travelling cortical waves gate perception in behaving primates (2020) Nature. DOI: https://www.nature.com/articles/s41586-020-2802-y.

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Vormstein-Schneider, D., Lin, J.D., Pelkey, K.A., Chittajallu, R., Guo, B., Arias-Garcia, M.A., Allaway, K., Sakopoulos, S., Schneider, G., Stevenson, O., Vergara, J., Sharma, J., Zhang, Q., Franken, T.P., Smith, J., Ibrahim, L.A., M Astro, K.J., Sabri, E., Huang, S., Favuzzi, E., Burbridge, T., Xu, Q., Guo, L., Vogel, I., Sanchez, V., Saldi, G.A., Gorissen, B.L., Yuan, X., Zaghloul, K.A., Devinsky, O., Sabatini, B.L., Batista-Brito, R., Reynolds, J., Feng, G., Fu, Z., McBain, C.J., Fishell, G., Dimidschstein, J. Viral manipulation of functionally distinct interneurons in mice, non-human primates and humans. (2020) Nature Neuroscience. DOI: 10.1038/s41593-020-0692-9

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Nandy, A.S., Nassi, J.J., Jadi, M.P., Reynolds, J.H. Optogenetically induced low-frequency correlations impair perception. (2019) Elife. 8. DOI: 10.7554/eLife.35123

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Avery, M., Nassi, J., Reynolds, J. Inferring neural circuit properties from optogenetic stimulation. (2018) PLOS One. 13(10):e0205386. DOI: 10.1371/journal.pone.0205386

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Muller, L., Chavane, F., Reynolds, J., Sejnowski, T.J. Cortical travelling waves: mechanisms and computational principles. (2018) Nature Reviews Neuroscience. DOI: 10.1038/nrn.2018.20

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Nandy, A.S., Nassi, J.J., Reynolds, J.H. Laminar Organization of Attentional Modulation in Macaque Visual Area V4. (2017) Neuron. 93(1):235-246. DOI: 10.1016/j.neuron.2016.11.029

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Dimidschstein, J., Chen, Q., Tremblay, R., Rogers, S.L., Saldi, G.A., Guo, L., Xu, Q., Liu, R., Lu, C., Chu, J., Grimley, J.S., Krostag, A.R., Kaykas, A., Avery, M.C., Rashid, M.S., Baek, M., Jacob, A.L., Smith, G.B., Wilson, D.E., Kosche, G., Kruglikov, I., Rusielewicz, T., Kotak, V.C., Mowery, T.M., Anderson, S.A., Callaway, E.M., Dasen, J.S., Fitzpatrick, D., Fossati, V., Long, M.A., Noggle, S., Reynolds, J.H., Sanes, D.H., Rudy, B., Feng, G., Fishell, G. A viral strategy for targeting and manipulating interneurons across vertebrate species. (2016) Nature Neuroscience. 19(12):1743-1749. DOI: 10.1038/nn.4430

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Nandy, A.S., Mitchell, J.F., Jadi, M.P., Reynolds, J.H. Neurons in Macaque Area V4 Are Tuned for Complex Spatio-Temporal Patterns. (2016) Neuron. 91(4):920-930. DOI: 10.1016/j.neuron.2016.07.026

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Disney, A.A., McKinney, C., Grissom, L., Lu, X., Reynolds, J.H. A multi-site array for combined local electrochemistry and electrophysiology in the non-human primate brain. (2015) Journal of Neuroscience Methods. 255:29-37. DOI: 10.1016/j.jneumeth.2015.07.009

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Nassi, J.J., Avery, M.C., Cetin, A.H., Roe, A.W., Reynolds, J.H. Optogenetic Activation of Normalization in Alert Macaque Visual Cortex. (2015) Neuron. 86(6):1504-17. DOI: 10.1016/j.neuron.2015.05.040

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Izpisua Belmonte, J.C., Callaway, E.M., Caddick, S.J., Churchland, P., Feng, G., Homanics, G.E., Lee, K.F., Leopold, D.A., Miller, C.T., Mitchell, J.F., Mitalipov, S., Moutri, A.R., Movshon, J.A., Okano, H., Reynolds, J.H., Ringach, D., Sejnowski, T.J., Silva, A.C., Strick, P.L., Wu, J., Zhang, F. Brains, genes, and primates. (2015) Neuron. 86(3):617-31. DOI: 10.1016/j.neuron.2015.03.021

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Mitchell, J.F., Boisvert, C.J., Reuter, J.D., Reynolds, J.H., Leblanc, M. Correction of refractive errors in rhesus macaques (Macaca mulatta) involved in visual research. (2014) Comparative Medicine. 64(4):300-8.

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Disney, A.A., Alasady, H.A., Reynolds, J.H. Muscarinic acetylcholine receptors are expressed by most parvalbumin-immunoreactive neurons in area MT of the macaque. (2014) Brain and Behavior. 4(3):431-45. DOI: 10.1002/brb3.225

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Disney, A.A., Reynolds, J.H. Expression of m1-type muscarinic acetylcholine receptors by parvalbumin-immunoreactive neurons in the primary visual cortex: a comparative study of rat, guinea pig, ferret, macaque, and human. (2014) Journal of Comparative Neurology. 522(5):986-1003. DOI: 10.1002/cne.23456

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Mitchell, J.F., Reynolds, J.H., Miller, C.T. Active vision in marmosets: a model system for visual neuroscience. (2014) Journal of Neuroscience. 34(4):1183-94. DOI: 10.1523/JNEUROSCI.3899-13.2014

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Devor, A., Bandettini, P.A., Boas, D.A., Bower, J.M., Buxton, R.B., Cohen, L.B., Dale, A.M., Einevoll, G.T., Fox, P.T., Franceschini, M.A., Friston, K.J., Fujimoto, J.G., Geyer, M.A., Greenberg, J.H., Halgren, E., Hämäläinen, M.S., Helmchen, F., Hyman, B.T., Jasanoff, A., Jernigan, T.L., Judd, L.L., Kim, S.G., Kleinfeld, D., Kopell, N.J., Kutas, M., Kwong, K.K., Larkum, M.E., Lo, E.H., Magistretti, P.J., Mandeville, J.B., Masliah, E., Mitra, P.P., Mobley, W.C., Moskowitz, M.A., Nimmerjahn, A., Reynolds, J.H., Rosen, B.R., Salzberg, B.M., Schaffer, C.B., Silva, G.A., So, P.T., Spitzer, N.C., Tootell, R.B., Van Essen, D.C., Vanduffel, W., Vinogradov, S.A., Wald, L.L., Wang, L.V., Weber, B., Yodh, A.G. The challenge of connecting the dots in the B.R.A.I.N. (2013) Neuron. 80(2):270-4. DOI: 10.1016/j.neuron.2013.09.008

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Ruiz, O., Lustig, B.R., Nassi, J.J., Cetin, A., Reynolds, J.H., Albright, T.D., Callaway, E.M., Stoner, G.R., Roe, A.W. Optogenetics through windows on the brain in the nonhuman primate. (2013) Journal of Neurophysiology. 110(6):1455-67. DOI: 10.1152/jn.00153.2013

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Anderson, E.B., Mitchell, J.F., Reynolds, J.H. Attention-dependent reductions in burstiness and action-potential height in macaque area V4. (2013) Nature Neuroscience. 16(8):1125-31. DOI: 10.1038/nn.3463

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Sharpee, T.O., Kouh, M., Reynolds, J.H. Trade-off between curvature tuning and position invariance in visual area V4. (2013) Proceedings of the National Academy of Sciences of the United States of America. 110(28):11618-23. DOI: 10.1073/pnas.1217479110

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Nandy, A.S., Sharpee, T.O., Reynolds, J.H., Mitchell, J.F. The fine structure of shape tuning in area V4. (2013) Neuron. 78(6):1102-15. DOI: 10.1016/j.neuron.2013.04.016

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Sundberg, K.A., Mitchell, J.F., Gawne, T.J., Reynolds, J.H. Attention influences single unit and local field potential response latencies in visual cortical area V4. (2012) Journal of Neuroscience. 32(45):16040-50. DOI: 10.1523/JNEUROSCI.0489-12.2012

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Fallah, M., Reynolds, J.H. Contrast dependence of smooth pursuit eye movements following a saccade to superimposed targets. (2012) PLOS One. 7(5):e37888. DOI: 10.1371/journal.pone.0037888

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Anderson, E.B., Mitchell, J.F., Reynolds, J.H. Attentional modulation of firing rate varies with burstiness across putative pyramidal neurons in macaque visual area V4. (2011) Journal of Neuroscience. 31(30):10983-92. DOI: 10.1523/JNEUROSCI.0027-11.2011

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Ciaramitaro, V.M., Mitchell, J.F., Stoner, G.R., Reynolds, J.H., Boynton, G.M. Object-based attention to one of two superimposed surfaces alters responses in human early visual cortex. (2011) Journal of Neurophysiology. 105(3):1258-65. DOI: 10.1152/jn.00680.2010

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Mitchell, J.F., Sundberg, K.A., Reynolds, J.H. Spatial attention decorrelates intrinsic activity fluctuations in macaque area V4. (2009) Neuron. 63(6):879-88. DOI: 10.1016/j.neuron.2009.09.013

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Berdyyeva, T.K., Reynolds, J.H. The dawning of primate optogenetics. (2009) Neuron. 62(2):159-60. DOI: 10.1016/j.neuron.2009.04.011

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Sundberg, K.A., Mitchell, J.F., Reynolds, J.H. Spatial attention modulates center-surround interactions in macaque visual area v4. (2009) Neuron. 61(6):952-63. DOI: 10.1016/j.neuron.2009.02.023

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Reynolds, J.H., Heeger, D.J. The normalization model of attention. (2009) Neuron. 61(2):168-85. DOI: 10.1016/j.neuron.2009.01.002

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Reynolds, J. Three hundred million years of attentional selection. (2008) Neuron. 60(4):528-30. DOI: 10.1016/j.neuron.2008.11.006

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Reynolds, J.H. Mapping the microcircuitry of attention. (2008) Nature Neuroscience. 11(8):861-2. DOI: 10.1038/nn0808-861


Khoe, W., Mitchell, J.F., Reynolds, J.H., Hillyard, S.A. ERP evidence that surface-based attention biases interocular competition during rivalry. (2008) Journal of Vision. 8(3):18.1-11. DOI: 10.1167/8.3.18

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Mitchell, J.F., Sundberg, K.A., Reynolds, J.H. Differential attention-dependent response modulation across cell classes in macaque visual area V4. (2007) Neuron. 55(1):131-41. DOI: 10.1016/j.neuron.2007.06.018

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Fallah, M., Stoner, G.R., Reynolds, J.H. Stimulus-specific competitive selection in macaque extrastriate visual area V4. (2007) Proceedings of the National Academy of Sciences of the United States of America. 104(10):4165-9. DOI: 10.1073/pnas.0611722104

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Bodelón, C., Fallah, M., Reynolds, J.H. Temporal resolution for the perception of features and conjunctions. (2007) Journal of Neuroscience. 27(4):725-30. DOI: 10.1523/JNEUROSCI.3860-06.2007

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Sundberg, K.A., Fallah, M., Reynolds, J.H. A motion-dependent distortion of retinotopy in area V4. (2006) Neuron. 49(3):447-57. DOI: 10.1016/j.neuron.2005.12.023

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Khoe, W., Mitchell, J.F., Reynolds, J.H., Hillyard, S.A. Exogenous attentional selection of transparent superimposed surfaces modulates early event-related potentials. (2005) Vision Research. 45(24):3004-14. DOI: 10.1016/j.visres.2005.04.021

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Stoner, G.R., Mitchell, J.F., Fallah, M., Reynolds, J.H. Interacting competitive selection in attention and binocular rivalry. (2005) Progress in Brain Research. 149:227-34. DOI: 10.1016/S0079-6123(05)49016-0

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Reynolds, J.H., Fallah, F. (2004) Functional Neuroimaging of Visual Cognition Attention and Performance XX.:363-380


Reynolds, J.H., Chelazzi, L. Attentional modulation of visual processing. (2004) Annual Review of Neuroscience. 27:611-47. DOI: 10.1146/annurev.neuro.26.041002.131039

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Mitchell, J.F., Stoner, G.R., Reynolds, J.H. Object-based attention determines dominance in binocular rivalry. (2004) Nature. 429(6990):410-3. DOI: 10.1038/nature02584

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Mitchell, J.F., Stoner, G.R., Fallah, M., Reynolds, J.H. Attentional selection of superimposed surfaces cannot be explained by modulation of the gain of color channels. (2003) Vision Research. 43(12):1323-8.

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Reynolds, J.H., Gottlieb, J.P., Kastner (2003) Fundamental Neuroscience, 2nd edition.:1249-1272


Reynolds, J.H., Desimone, R. Interacting roles of attention and visual salience in V4. (2003) Neuron. 37(5):853-63.

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Reynolds, J.H., Alborzian, S., Stoner, G.R. Exogenously cued attention triggers competitive selection of surfaces. (2003) Vision Research. 43(1):59-66.

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Fallah, M., Reynolds, J.H. Attention! V1 neurons lining up for inspection. (2001) Neuron. 31(5):674-5.

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Fries, P., Reynolds, J.H., Rorie, A.E., Desimone, R. Modulation of oscillatory neuronal synchronization by selective visual attention. (2001) Science. 291(5508):1560-3. DOI: 10.1126/science.291.5508.1560

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Reynolds, J.H., Pasternak, T., Desimone, R. Attention increases sensitivity of V4 neurons. (2000) Neuron. 26(3):703-14.

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Reynolds, J.H., Desimone, R. The role of neural mechanisms of attention in solving the binding problem. (1999) Neuron. 24(1):19-29, 111-25.


Reynolds, J.H., Chelazzi, L., Desimone, R. Competitive mechanisms subserve attention in macaque areas V2 and V4. (1999) Journal of Neuroscience. 19(5):1736-53.

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Carpenter, G.A., Grossberg, S., Reynolds, J.H. A fuzzy ARTMAP nonparametric probability estimator for nonstationary pattern recognition problems. (1995) IEEE Trans Neural Netw. 6(6):1330-6. DOI: 10.1109/72.471374

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Carpenter, G.A., Grossberg, S., Markuzon, N., Reynolds, J.H., Rosen, D.B. Fuzzy ARTMAP: A neural network architecture for incremental supervised learning of analog multidimensional maps. (1992) IEEE Trans Neural Netw. 3(5):698-713. DOI: 10.1109/72.159059

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Education

BS, Economics, University of Pennsylvania
PhD, Cognitive and Neural Systems, Boston University
Intramural Research Fellow, Laboratory of Neuropsychology, National Institute of Mental Health


Affiliations


Awards & Honors

  • 2022 AAAS Fellow

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