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Myers, C.P., Lewcock, J.W., Hanson, M.G., Gosgnach, S., Aimone, J.B., Gage, F.H., Lee, K.F., Landmesser, L.T., Pfaff, S.L. Cholinergic input is required during embryonic development to mediate proper assembly of spinal locomotor circuits. (2005) Neuron. 46(1):37-49. DOI: 10.1016/j.neuron.2005.02.022

Marquardt, T., Shirasaki, R., Ghosh, S., Andrews, S.E., Carter, N., Hunter, T., Pfaff, S.L. Coexpressed EphA receptors and ephrin-A ligands mediate opposing actions on growth cone navigation from distinct membrane domains. (2005) Cell. 121(1):127-39. DOI: 10.1016/j.cell.2005.01.020

Goulding, M., Pfaff, S.L. Development of circuits that generate simple rhythmic behaviors in vertebrates. (2005) Current Opinion in Neurobiology. 15(1):14-20. DOI: 10.1016/j.conb.2005.01.017

Lee, S.K., Jurata, L.W., Nowak, R., Lettieri, K., Kenny, D.A., Pfaff, S.L., Gill, G.N. The LIM domain-only protein LMO4 is required for neural tube closure. (2005) Molecular and Cellular Neurosciences. 28(2):205-14. DOI: 10.1016/j.mcn.2004.04.010

Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. Olig2 and Ngn2 function in opposition to modulate gene expression in motor neuron progenitor cells. (2005) Genes & Development. 19(2):282-94. DOI: 10.1101/gad.1257105

Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L., Gill, G.N. Small CTD phosphatases function in silencing neuronal gene expression. (2005) Science. 307(5709):596-600. DOI: 10.1126/science.1100801

Cepeda-Nieto, A.C., Pfaff, S.L., Varela-Echavarría, A. Homeodomain transcription factors in the development of subsets of hindbrain reticulospinal neurons. (2005) Molecular and Cellular Neurosciences. 28(1):30-41. DOI: 10.1016/j.mcn.2004.06.016

Pak, W., Hindges, R., Lim, Y.S., Pfaff, S.L., O'Leary, D.D. Magnitude of binocular vision controlled by islet-2 repression of a genetic program that specifies laterality of retinal axon pathfinding. (2004) Cell. 119(4):567-78. DOI: 10.1016/j.cell.2004.10.026

Schwander, M., Shirasaki, R., Pfaff, S.L., Müller, U. Beta1 integrins in muscle, but not in motor neurons, are required for skeletal muscle innervation. (2004) Journal of Neuroscience. 24(37):8181-91. DOI: 10.1523/JNEUROSCI.1345-04.2004

Weiner, J.A., Koo, S.J., Nicolas, S., Fraboulet, S., Pfaff, S.L., Pourquié, O., Sanes, J.R. Axon fasciculation defects and retinal dysplasias in mice lacking the immunoglobulin superfamily adhesion molecule BEN/ALCAM/SC1. (2004) Molecular and Cellular Neurosciences. 27(1):59-69. DOI: 10.1016/j.mcn.2004.06.005

Lee, S.K., Jurata, L.W., Funahashi, J., Ruiz, E.C., Pfaff, S.L. Analysis of embryonic motoneuron gene regulation: derepression of general activators function in concert with enhancer factors. (2004) Development. 131(14):3295-306. DOI: 10.1242/dev.01179

Thaler, J.P., Koo, S.J., Kania, A., Lettieri, K., Andrews, S., Cox, C., Jessell, T.M., Pfaff, S.L. A postmitotic role for Isl-class LIM homeodomain proteins in the assignment of visceral spinal motor neuron identity. (2004) Neuron. 41(3):337-50.

Cai, C.L., Liang, X., Shi, Y., Chu, P.H., Pfaff, S.L., Chen, J., Evans, S. Isl1 identifies a cardiac progenitor population that proliferates prior to differentiation and contributes a majority of cells to the heart. (2003) Developmental Cell. 5(6):877-89.

Lee, S.K., Pfaff, S.L. Synchronization of neurogenesis and motor neuron specification by direct coupling of bHLH and homeodomain transcription factors. (2003) Neuron. 38(5):731-45.

Koo, S.J., Pfaff, S.L. Fine-tuning motor neuron properties: signaling from the periphery. (2002) Neuron. 35(5):823-6.

Hu, W.Y., Myers, C.P., Kilzer, J.M., Pfaff, S.L., Bushman, F.D. Inhibition of retroviral pathogenesis by RNA interference. (2002) Current Biology. 12(15):1301-11.

Thaler, J.P., Lee, S.K., Jurata, L.W., Gill, G.N., Pfaff, S.L. LIM factor Lhx3 contributes to the specification of motor neuron and interneuron identity through cell-type-specific protein-protein interactions. (2002) Cell. 110(2):237-49.

Shirasaki, R., Pfaff, S.L. Transcriptional codes and the control of neuronal identity. (2002) Annual Review of Neuroscience. 25:251-81. DOI: 10.1146/annurev.neuro.25.112701.142916

Lee, S.K., Pfaff, S.L. Transcriptional networks regulating neuronal identity in the developing spinal cord. (2001) Nature Neuroscience. 4 Suppl:1183-91. DOI: 10.1038/nn750

Marquardt, T., Pfaff, S.L. Cracking the transcriptional code for cell specification in the neural tube. (2001) Cell. 106(6):651-4.

Lin, W., Burgess, R.W., Dominguez, B., Pfaff, S.L., Sanes, J.R., Lee, K.F. Distinct roles of nerve and muscle in postsynaptic differentiation of the neuromuscular synapse. (2001) Nature. 410(6832):1057-64. DOI: 10.1038/35074025

Sharma, K., Leonard, A.E., Lettieri, K., Pfaff, S.L. Genetic and epigenetic mechanisms contribute to motor neuron pathfinding. (2000) Nature. 406(6795):515-9. DOI: 10.1038/35020078

Brown, A., Yates, P.A., Burrola, P., Ortuño, D., Vaidya, A., Jessell, T.M., Pfaff, S.L., O'Leary, D.D., Lemke, G. Topographic mapping from the retina to the midbrain is controlled by relative but not absolute levels of EphA receptor signaling. (2000) Cell. 102(1):77-88.

Jurata, L.W., Thomas, J.B., Pfaff, S.L. Transcriptional mechanisms in the development of motor control. (2000) Current Opinion in Neurobiology. 10(1):72-9.

Harrison, K.A., Thaler, J., Pfaff, S.L., Gu, H., Kehrl, J.H. Pancreas dorsal lobe agenesis and abnormal islets of Langerhans in Hlxb9-deficient mice. (1999) Nature Genetics. 23(1):71-5. DOI: 10.1038/12674

Thaler, J., Harrison, K., Sharma, K., Lettieri, K., Kehrl, J., Pfaff, S.L. Active suppression of interneuron programs within developing motor neurons revealed by analysis of homeodomain factor HB9. (1999) Neuron. 23(4):675-87.

Sharma, K., Sheng, H.Z., Lettieri, K., Li, H., Karavanov, A., Potter, S., Westphal, H., Pfaff, S.L. LIM homeodomain factors Lhx3 and Lhx4 assign subtype identities for motor neurons. (1998) Cell. 95(6):817-28.

Takuma, N., Sheng, H.Z., Furuta, Y., Ward, J.M., Sharma, K., Hogan, B.L., Pfaff, S.L., Westphal, H., Kimura, S., Mahon, K.A. Formation of Rathke's pouch requires dual induction from the diencephalon. (1998) Development. 125(23):4835-40.

Pfaff, S.L., Taylor, W.L. Xenopus TFIIIA gene transcription is dependent on cis-element positioning and chromatin structure. (1998) Molecular and Cellular Biology. 18(7):3811-8.

Pfaff, S., Kintner, C. Neuronal diversification: development of motor neuron subtypes. (1998) Current Opinion in Neurobiology. 8(1):27-36.

Jurata, L.W., Pfaff, S.L., Gill, G.N. The nuclear LIM domain interactor NLI mediates homo- and heterodimerization of LIM domain transcription factors. (1998) Journal of Biological Chemistry. 273(6):3152-7.

Ahlgren, U., Pfaff, S.L., Jessell, T.M., Edlund, T., Edlund, H. Independent requirement for ISL1 in formation of pancreatic mesenchyme and islet cells. (1997) Nature. 385(6613):257-60. DOI: 10.1038/385257a0

Varela-Echavarría, A., Pfaff, S.L., Guthrie, S. Differential expression of LIM homeobox genes among motor neuron subpopulations in the developing chick brain stem. (1996) Molecular and Cellular Neurosciences. 8(4):242-57. DOI: 10.1006/mcne.1996.0061

Pfaff, S.L., Mendelsohn, M., Stewart, C.L., Edlund, T., Jessell, T.M. Requirement for LIM homeobox gene Isl1 in motor neuron generation reveals a motor neuron-dependent step in interneuron differentiation. (1996) Cell. 84(2):309-20.

Tsuchida, T., Ensini, M., Morton, S.B., Baldassare, M., Edlund, T., Jessell, T.M., Pfaff, S.L. Topographic organization of embryonic motor neurons defined by expression of LIM homeobox genes. (1994) Cell. 79(6):957-70.

Yamada, T., Pfaff, S.L., Edlund, T., Jessell, T.M. Control of cell pattern in the neural tube: motor neuron induction by diffusible factors from notochord and floor plate. (1993) Cell. 73(4):673-86.

Pfaff, S.L., Taylor, W.L. Characterization of a Xenopus oocyte factor that binds to a developmentally regulated cis-element in the TFIIIA gene. (1992) Developmental Biology. 151(1):306-16.

Pfaff, S.L., Hall, R.K., Hart, G.C., Taylor, W.L. Regulation of the Xenopus laevis transcription factor IIIA gene during oogenesis and early embryogenesis: negative elements repress the O-TFIIIA promoter in embryonic cells. (1991) Developmental Biology. 145(2):241-54.

Pfaff, S.L., Tamkun, M.M., Taylor, W.L. pOEV: a Xenopus oocyte protein expression vector. (1990) Analytical Biochemistry. 188(1):192-9.

Pfaff, S.L., Duesberg, P.H. Two autonomous myc oncogenes in avian carcinoma virus OK10. (1988) Journal of Virology. 62(10):3703-9.

Pfaff, S.L., Zhou, R.P., Young, J.C., Hayflick, J., Duesberg, P.H. Defining the borders of the chicken proto-fps gene, a precursor of Fujinami sarcoma virus. (1985) Virology. 146(2):307-14.