Deepshika Ramanan, PhD

Assistant Professor

NOMIS Center for Immunobiology and Microbial Pathogenesis

Deepshika Ramanan
Salk Institute for Biological Studies - Publications

all Publications


Jaquish, A., Phung, E., Gong, X., Baldominos-Flores, P., Galvan-Pena, S., Bursulaya, I., Magill, I., , Bertrand, K., Chambers, C., Agudo, J., Mathis, D., Benoist, C., Ramanan, D. Expansion of mammary intraepithelial lymphocytes and intestinal inputs shape T cell dynamics in lactogenesis. (2024) bioRxiv. DOI: 10.1101/2024.07.09.602739

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Ramanan, D., Chowdhary, K., Candéias, S.M., Sassone-Corsi, M., Gelineau, A., Mathis, D., Benoist, C. Homeostatic, repertoire and transcriptional relationships between colon T regulatory cell subsets. (2023) Proceedings of the National Academy of Sciences of the United States of America. 120(50):e2311566120. DOI: 10.1073/pnas.2311566120

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Ramanan, D., Pratama, A., Zhu, Y., Venezia, O., Sassone-Corsi, M., Chowdhary, K., Galván-Peña, S., Sefik, E., Brown, C., Gélineau, A., Mathis, D., Benoist, C. Regulatory T cells in the face of the intestinal microbiota. (2023) Nature Reviews. Immunology. DOI: 10.1038/s41577-023-00890-w

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Ramanan, D., Chowdhary, K., Candéias, S.M., Sassone-Corsi, M., Mathis, D., Benoist, C. Homeostatic, repertoire and transcriptional relationships between colon T regulatory cell subsets. (2023) bioRxiv. DOI: 10.1101/2023.05.17.541199

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Wu, M., Zheng, W., Song, X., Bao, B., Wang, Y., Ramanan, D., Yang, D., Liu, R., Macbeth, J.C., Do, E.A., Andrade, W.A., Yang, T., Cho, H.S., Gazzaniga, F.S., Ilves, M., Coronado, D., Thompson, C., Hang, S., Chiu, I.M., Moffitt, J.R., Hsiao, A., Mekalanos, J.J., Benoist, C., Kasper, D.L. Microbiome induced complement synthesized in the gut protects against enteric infections. (2023) bioRxiv. DOI: 10.1101/2023.02.02.523770

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Sassone-Corsi, M., Azriel, S., Simon, A., Ramanan, D., Ortiz-Lopez, A., Chen, F., Yissachar, N., Mathis, D., Benoist, C. Sequestration of gut pathobionts in intraluminal casts, a mechanism to avoid dysregulated T cell activation by pathobionts. (2022) Proceedings of the National Academy of Sciences of the United States of America. 119(41):e2209624119. DOI: 10.1073/pnas.2209624119

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Yan, Y., Ramanan, D., Rozenberg, M., McGovern, K., Rastelli, D., Vijaykumar, B., Yaghi, O., Voisin, T., Mosaheb, M., Chiu, I., Itzkovitz, S., Rao, M., Mathis, D., Benoist, C. Interleukin-6 produced by enteric neurons regulates the number and phenotype of microbe-responsive regulatory T cells in the gut. (2021) Immunity. 54(3):499-513.e5. DOI: 10.1016/j.immuni.2021.02.002

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Ramanan, D., Sefik, E., Galván-Peña, S., Wu, M., Yang, L., Yang, Z., Kostic, A., Golovkina, T.V., Kasper, D.L., Mathis, D., Benoist, C. An Immunologic Mode of Multigenerational Transmission Governs a Gut Treg Setpoint. (2020) Cell. 181(6):1276-1290.e13. DOI: 10.1016/j.cell.2020.04.030

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Wong, S.Y., Coffre, M., Ramanan, D., Hines, M.J., Gomez, L.E., Peters, L.A., Schadt, E.E., Koralov, S.B., Cadwell, K. B Cell Defects Observed in Knockout Mice Are a Consequence of a Mutation Frequently Found in Inbred Strains. (2018) Journal of immunology. 201(5):1442-1451. DOI: 10.4049/jimmunol.1800014

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Ramanan, D., Bowcutt, R., Lee, S.C., Tang, M.S., Kurtz, Z.D., Ding, Y., Honda, K., Gause, W.C., Blaser, M.J., Bonneau, R.A., Lim, Y.A., Loke, P., Cadwell, K. Helminth infection promotes colonization resistance via type 2 immunity. (2016) Science. 352(6285):608-12. DOI: 10.1126/science.aaf3229

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Ramanan, D., Cadwell, K. Intrinsic Defense Mechanisms of the Intestinal Epithelium. (2016) Cell Host & Microbe. 19(4):434-41. DOI: 10.1016/j.chom.2016.03.003

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Marchiando, A.M., Ramanan, D., Ding, Y., Gomez, L.E., Hubbard-Lucey, V.M., Maurer, K., Wang, C., Ziel, J.W., van Rooijen, N., Nuñez, G., Finlay, B.B., Mysorekar, I.U., Cadwell, K. A deficiency in the autophagy gene Atg16L1 enhances resistance to enteric bacterial infection. (2013) Cell Host & Microbe. 14(2):216-24. DOI: 10.1016/j.chom.2013.07.013

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Zhang, Z., Wu, Y., Wang, Z., Dunning, F.M., Rehfuss, J., Ramanan, D., Chapman, E.R., Jackson, M.B. Release mode of large and small dense-core vesicles specified by different synaptotagmin isoforms in PC12 cells. (2011) Molecular Biology of the Cell. 22(13):2324-36. DOI: 10.1091/mbc.E11-02-0159

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Education

Postdoctoral Fellow, Harvard Medical School
PhD, Immunology and Inflammation, New York University
BS, Cell and Molecular Biology, Winona State University


Awards & Honors

  • V Foundation’s A Grant of Her Own: The Women Scientists Innovation Award for Cancer Research, 2023
  • Damon Runyon Dale F. Frey Breakthrough Scientist Award
  • STAT Wunderkind Award
  • The Harold M. Weintraub Graduate Student Award