Waitt Advanced Biophotonics Center

Forschung

Salk Institute for Biological Studies - Waitt Advanced Biophotonics Center - Research

2026 PUBLICATIONS


Alle Veröffentlichungen


Garcia, G.C., Bartol, T.M., Kirk, L.M., Badala, P., Harris, K.M., Sejnowski, T.J. Transition of the presynaptic vesicle cluster from a compact to dispersed organization during long-term potentiation. (2026) Verhandlungen der Nationalen Akademie der Wissenschaften der Vereinigten Staaten von Amerika. 123(22):e2522754123. DOI: 10.1073/pnas.2522754123

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Senturk, G., Driscoll, S., Osseward, P.J., Gullo, M., Lettieri, K., Pfaff, S.L. Circuit organization and transcriptomic heterogeneity of sympathetic circuits innervating cranial structures. (2026) Cell Reports. 45(6):117446. DOI: 10.1016/j.celrep.2026.117446

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Yao, M., Praturu, A., Sharpee, T.O. Multiscale hyperbolic embedding reveals hierarchical structure in complex biological systems. (2026) NPJ Syst Biol Appl. DOI: 10.1038/s41540-026-00725-z

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Kirk, L.M., Garcia, G.C., Hanka, D.C., Zatyko, K., Bartol, T., Sejnowski, T.J., Harris, K.M. Presynaptic vesicles supply membrane for axonal bouton enlargement during LTP. (2026) Journal of Neuroscience. DOI: 10.1523/JNEUROSCI.1335-25.2026

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Patiño, M., Bhamidipati, S.K., Cazares, C., Callaway, E.M. Protocol for mapping neural circuit connectivity with START: Single transcriptome assisted rabies tracing. (2026) STAR Protokoll. 7(2):104634. DOI: 10.1016/j.xpro.2026.104634

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Li, S.J., Hangya, B., Gupta, U., Singh, H., Fischer, K.B., Sturgill, J.F., Callaway, E.M., Kepecs, A. A disinhibitory basal forebrain-to-cortex projection supports sustained attention. (2026) Zelle. 189(13):4140-4158.e9. DOI: 10.1016/j.cell.2026.05.046

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Sejnowski, T.J. Dynamical mechanisms for coordinating long-term working memory based on the precision of spike-timing in cortical neurons. (2026) Biol Cybern. 120(3-4). DOI: 10.1007/s00422-026-01039-3

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Khurana, T.K., Wu, L.Y., Gherardini, P.F., Moeinzadeh, S., Mohseni, M., Yasar, F.G., Dettloff, R., Poelma, J., Sabri, S., Scaramozza, A., Li, Y., Rouzbeh, N., Elder, N., Deshmukh, S., Majd, A., Gupta, R., Farahvashi, S., Thomas, I., Betts, C., Charbonier, F., Roberts, D., Hsiung, P.L., Zargari-Pariset, E., Yau, R., Vila, O.F., Phillips, M., Xiao, C., Wang, J., Zhou, Y., Adhikari, P., Taing, M., Farjami, E., Javanmardi, B., Siu, M., , Valente, C., Cox, C., Geiger-Schuller, K., Turley, S.J., Rozenblatt-Rosen, O., Fattahi, F., Ecker, J.R., Jones, J.R., Gage, F.H., Spitzer, M.H., Pritchard, J., Kupershmidt, I., Lundberg, P., Levy, S., Ostadan, O., Schroth, G.P., Ronaghi, M. Scalable longitudinal imaging and transcriptomics of cells in dynamic enclosures. (2026) bioRxiv. DOI: 10.64898/2026.05.05.723030

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Austin-Muttitt, K., David, B.R., Sassi, M., Agarwal, R., Sabedot, T.S., Jones, J.R., Cuoco, M.S., Jenkins, B.J., Roberts, L.D., Harris, L., Kieronczyk, N., Han, G., Hitchings, M.D., Donaghy, P.C., Yarnall, A.J., Thornton, C.A., Mohamed, B., Morgan, A.H., Thomas, F., Jones, N., Gage, F.H., Davies, J.S. Aberrant CD4 T cell refeeding response impairs neuro-immune crosstalk in Parkinson's disease. (2026) bioRxiv. DOI: 10.64898/2026.05.06.723248

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Revanna, J.S., Wessendorf-Rodriguez, K., Xiao, Q., Sabedot, T.S., Cuoco, M.S., Sarkar, S., Zhou-Yang, L., Lim, C.K., Prozapas, V.N., Wooldridge, R.S., Chadarevian, J.P., Pratt, J.M., Steiner, S.C., Katz, A., Mertens, J., Kelly, J.W., Solé-Domènech, S., Melchior, J.T., Metallo, C.M., Jones, J.R., Gage, F.H. Impaired lipoprotein secretion by APOE4 leads to lysosomal and mitochondrial dysfunction in human microglia. (2026) bioRxiv. DOI: 10.64898/2026.05.12.724612

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Oliveira, J.F., Agarwal, A., Beckervordersandforth, R., Curreli, S., Denizot, A., Dulla, C., Enger, R., Goda, Y., Goshen, I., Holt, M.G., Nimmerjahn, A., Perea, G., Scimemi, A., Henneberger, C. The multiple scales of astrocytic functional units. (2026) Nature Neuroscience. DOI: 10.1038/s41593-026-02308-x

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Hughes, J.B., Sandholm, A., Croll, D., Senchyna, F., Schneider, K., Butterfield, R., McHugh, T.L.M., Brown, I., Deguchi, H., Hilsabeck, T.A.U., Mak, S., Wilson, K.A., Davtyan, H., Blurton-Jones, M., Herdy, J., Higuchi-Sanabria, R., Gage, F.H., Furman, D., Ellerby, L.M., Desprez, P.Y., Campisi, J. DNA damage drives a unique, Alzheimer's disease-relevant senescent state in neurons. (2026) bioRxiv. DOI: 10.64898/2026.04.02.716205

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Da Silva, I.I.N., Ramirez, D., Parylak, S.L., Wallace, L.A., Tucker, J.K., Erberich, J.M., Katariya, R., McDonald, A.H., Gallina, I.S., Tucker, A.L., Burgado, J., Jaeger, B.N., Barron, J.J., Pratt, J.M., Pena, M., Racha, V., Lim, C.K., Fernandes, S., Benassi, S., Randolph-Moore, L., Vadodaria, K.C., Marchetto, M.C., Allen, N.J., Gage, F.H. CK2 inhibition suppresses glial inflammation in models of neuroinflammation and neurodegeneration. (2026) Nature Communications. DOI: 10.1038/s41467-026-71736-x

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Barykina, N.V., Carey, E.M., Oliinyk, O.S., Mendonça-Gomes, J.M., de Oliveira, S., Nimmerjahn, A., Verkhusha, V.V. Synthetic multicolor antigen-stabilizable nanobody platform for intersectional labeling and functional imaging. (2026) Nature Methods. DOI: 10.1038/s41592-026-03056-3

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Lucciola, R., Herdy, J.R., Vajaphattana, Y., Karbacher, L., Sabedot, T.S., Cuoco, M.S., Traxler, L., Kang, A., Reynolds, M., Jones, J.R., Schafer, S.T., Mertens, J., Gage, F.H. RUNX1 and YY1 modulate neuronal fate and energy metabolism in Alzheimer's disease. (2026) bioRxiv. DOI: 10.64898/2026.04.13.716801

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Doludda, B., Barde, W., D'Egidio, F., Fitzsimons, C.P., Frisén, J., Gage, F.H., Jessberger, S., Lazarov, O., Lie, D.C., Lucassen, P.J., de Lucia, C., Salta, E., Song, H., Song, J., Thuret, S., Toda, T., Kempermann, G. Adult neurogenesis: New neurons, new opportunities. (2026) Cell Stem Cell. 33(3):382-392. DOI: 10.1016/j.stem.2026.01.014

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Bright, M., Mi, X., Duarte, D., Carey, E., Lyu, B., Wang, Y., Nimmerjahn, A., Yu, G. AQuA2-Cloud: a web platform for fluorescence bioimaging activity analysis. (2026) bioRxiv. DOI: 10.64898/2026.03.06.709938

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Duff, M.K., Li, M.J., Nimmerjahn, A. Astrocyte Regulation of Spinal Circuit Function. (2026) J Neurochem. 170(2):e70366. DOI: 10.1111/jnc.70366

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Tsuda, B., Pate, S.C., Tye, K.M., Siegelmann, H.T., Sejnowski, T.J. Neuromodulators Generate Multiple Context-Relevant Behaviors in Recurrent Neural Networks. (2026) Neural Computation.:1-36 DOI: 10.1162/NECO.a.1489

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Keller, T.A., Muller, L., Sejnowski, T.J., Welling, M. A Spatiotemporal Perspective on Dynamical Computation in Neural Information Processing Systems. (2026) ArXiv.

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Argueti-Ostrovsky, S., Lim, S.M., Arogundade, O.A., Diaz-Garcia, S., Yunisova, G., Meng, A., Hermann, A., Ong, K., Eremenko, E., Bravo-Hernandez, M., Driscoll, S.P., Lee, C.Z., Jiang, X., Stavsky, A., Barel, S., Shani, T., Kahn, J., Pfaff, S.L., Monsonego, A., Marsala, M., Ravits, J., Lagier-Tourenne, C., Israelson, A. Impaired nucleocytoplasmic transport in SOD1-mediated ALS. (2026) Mol Neurodegener. DOI: 10.1186/s13024-026-00930-8


Wagner, M., Chen, Y., Karuvally, A., Cameron, M., Sejnowski, T.J. Balancing Stability and Flow in Hippocampal Networks via Inductive Bias and Learned Symmetry Breaking. (2026) bioRxiv. DOI: 10.64898/2026.02.06.704443

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Hur, M., Bartol, T.M., Rangamani, P., Sejnowski, T.J., Mjolsness, E. Synaptic spine head morphodynamics from graph grammar rules for actin dynamics. (2026) bioRxiv. DOI: 10.1101/2025.04.18.649558

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