Margarita Behrens, PhD

Forschungsprofessor

Labor für computergestützte Neurobiologie

Salk Institut für Biologische Studien - Veröffentlichungen

Alle Veröffentlichungen


Zeng, Q., Wang, W., Tian, W., Klein, A., Bartlett, A., Liu, H., Nery, J.R., Castanon, R.G., Osteen, J., Johnson, N.D., Ding, W., Chen, H., Altshul, J., Kenworthy, M., Valadon, C., Owens, W., Wu, Z., Amaral, M.L., Zemke, N.R., Song, Y., Báez-Becerra, C.T., Cho, S., Chen, C., Willier, J., Cao, S., Rink, J., Lee, J., Barcoma, A., Arzavala, J., Emerson, N., Lu, Y.R., Ren, B., Behrens, M.M., Ecker, J.R. Cell-type-specific transposon demethylation and TAD remodeling in aging mouse brain. (2026) Cell. DOI: 10.1016/j.cell.2026.02.015

+ Abstract erweitern


Amaral, M.L., Mamde, S., Miller, M., Hou, X., Arzavala, J., Osteen, J., Johnson, N.D., Smoot, E.W., Yang, Q., Eisner, E., Zeng, Q., Báez-Becerra, C.T., Olness, J., Kern, J.C., Rink, J., Barcoma, A., Cho, S., Cao, S., Emerson, N., Lee, J., Willier, J., Loe, T., Jiao, H., Zu, S., Zhu, Q., Preissl, S., Wang, A., Ecker, J.R., Behrens, M.M., Ren, B. Single-cell epigenomics uncovers heterochromatin instability and transcription factor dysfunction during mouse brain aging. (2026) Cell Reports. 45(3):117073. DOI: 10.1016/j.celrep.2026.117073

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Zhang, W., Ding, W., Li, K., Chang, L., Klein, A., Báez-Becerra, C.T., Rink, J.A., Bartlett, A., Chen, H., Schenker, N., Johansen, N., Mollenkopf, T., Fu, Y., Yang, X., Liu, S., Seng, C., Miao, B., Liu, T., Zhu, Q., Hodge, R.D., Bakken, T.E., Lein, E.S., Hawrylycz, M., Xu, X., Behrens, M.M., Ren, B., Ecker, J.R., Wang, T., Li, D. An Integrated Single-Cell and Epigenomic Resource for Comparative Analysis of the Basal Ganglia. (2026) bioRxiv. DOI: 10.64898/2026.01.29.702575

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Wang, Z., Zu, S., Armand, E.J., Loe, T.H., Rink, J.A., Wu, W., Xie, Y., Chang, L., Zhu, C., Johnson, N.D., Lee, J., Willier, J.K., Cho, S., Cao, S., Barcoma, A.S., Emerson, N., Liu, H., Wang, K., Gibbs, Z.A., Gao, X., Xu, S., Guo, D., Tu, Z., Li, Y.E., Ecker, J.R., Behrens, M.M., Ren, B. Integrative Single-Cell Epigenomic Atlas Annotates the Regulatory Genome of the Adult Mouse Brain. (2026) bioRxiv. DOI: 10.64898/2026.02.07.704075

+ Abstract erweitern


Chang, L., Li, K., Xie, Y., Zhong, G., Rink, J.A., Báez-Becerra, C.T., Lie, A., Indralingam, H.S., Dong, K., Loe, T., Wang, Z., Zu, S., Kern, J.C., Zhao, Z., Boone, E., Flores, J., Monell, A., Olness, J., Barragan, C., Osgood, E., Owens, W., Schenker-Ahmed, N., Zhang, W., Liu, D., Barcoma, A.S., Willier, J.K., Knutson, K.W., Russo, K.G., Liu, J., Cho, S., Arzavala, J., Young, C.K., Sundaram, G.V., Manning, A.C., Sanchez, Y., Bikkina, A., Berry, J., Gao, X., O'Connor, C., Liem, M., Marrin, M.V., Rose, C., Alt, S.N., Zhu, C., Zemke, N.R., Ding, W., Klein, A., Fu, Y., Johansen, N., Bakken, T.E., Hodge, R.D., Keene, C.D., Lein, E.S., Li, D., Zhu, Q., Wang, T., Xu, X., Ecker, J.R., Behrens, M.M., Ren, B. Single-cell Multiome Analysis of Chromatin State and Transcriptome in the Human Basal Ganglia. (2026) bioRxiv. DOI: 10.64898/2026.02.03.703645

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Xie, Y., Chang, L., Zhong, G., Rink, J.A., Báez-Becerra, T., Armand, E., Ding, W., Li, K., Bonne, E., Lie, A., Indralingam, H.S., Dong, K., Loe, T., Huang, B., Wang, Z., Barcoma, A.S., Willier, J.K., Knutson, K.W., Liu, J., Cho, S., Cao, S., Russo, K.G., Young, C.K., Arzavala, J., Sanchez, Y., Bikkina, A., Schenker-Ahmed, N., Kern, C., Zhao, Z., Klein, A., Flores, J., Tai, C.Y., Olness, J., Monell, A., Moghadami, S., Barragan, C., Chen, C., Owens, W., O'Connor, C., Liem, M., Marrin, M.V., Rose, C., Alt, S.N., Emerson, N., Osteen, J., Lucero, J., Li, D., Hodge, R.D., Wang, T., Keene, C.D., Xu, X., Zhu, Q., Ecker, J.R., Behrens, M.M., Ren, B. Single-Cell Atlas of Transcription and Chromatin States Reveals Regulatory Programs in the Human Brain. (2026) bioRxiv. DOI: 10.64898/2026.02.02.703166

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Ding, W., Klein, A., Báez-Becerra, C.T., Rink, J.A., Bartlett, A., Zeng, Q., Wang, R., Castanon, R.G., Nery, J.R., Osgood, E., Owens, W., Petrella, A., Chen, C., Acerbo, A.S., Barcoma, A.S., Liu, J., Russo, K.G., Knutson, K.W., Young, C.K., Willier, J.K., Barragan, C., Arzavala, J., Cho, S., Altshul, J., Chan, D., Soma, E., Luo, J., Jain, M., Velazquez, S., Schenker-Ahmed, N., Sundaram, G.V., Manning, A.C., Sanchez, Y., Bikkina, A., Fu, S., O'Connor, C., Liem, M., Marrin, M.V., Rose, C., Alt, S.N., Berry, J., Kern, C., Boone, E., Tian, W., Wu, Y., Hariharan, M., Fu, Y., Xie, Y., Li, K., Chang, L., Zhang, W., Chen, H., Johansen, N., Zhao, Z., Flores, J., Tai, C.Y., Olness, J., Zhu, Q., Hodge, R.D., Bakken, T.E., Lein, E.S., Li, D., Wang, T., Xu, X., Ren, B., Behrens, M.M., Ecker, J.R. A Multimodal Single-Cell Epigenomic and 3D Genome Atlas of the Human Basal Ganglia. (2026) bioRxiv. DOI: 10.64898/2026.02.12.705594

+ Abstract erweitern


Berry, J.V., Tran, B.M., Wu, G., Tan, Z., Mendoza, E., Kim, M., Arat, Z., Lin, P.S.H., Valenzuela, L., Holmes, T.C., Virovka, A., Thaxton, M., Nguyen, M., Stein, S., Sigaroudi, V.R., De La Rosa, A., Gawronski, B., Silva, J., Gonzalez, L., Wright, S., Wood, K., Hui, G.K., Anousaya, D., Gangeddula, V.R., Gama, N., Gama, J., Gross, T., Bunney, B., Stein, R., Sequeira, P.A., Mamdani, F., Cartagena, P., Bunney, W.E., Lou, J., Park, H.L., Wilson, A., Brooks, H.M., Allhusen, V., Crawford, J., Knight, J.M., Ren, B., Ecker, J., Behrens, M.M., Keene, C.D., Stark, C., Head, E., Yong, W., Monuki, E., Xu, X. UC Irvine's Brain Initiative Cell Atlas Network (BICAN) Brain Procurement Program for the Center for Multiomic Human Brain Cell Atlas Project. (2025) bioRxiv. DOI: 10.64898/2025.12.23.696304

+ Abstract erweitern


Mukamel, E.A., Liu, H., Behrens, M.M., Ecker, J.R. Cell-type-specific enrichment of somatic aneuploidy in the mammalian brain. (2025) Neuron. 113(17):2814-2821.e2. DOI: 10.1016/j.neuron.2025.08.006

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Amaral, M.L., Mamde, S., Miller, M., Hou, X., Arzavala, J., Osteen, J., Johnson, N.D., Smoot, E.W., Yang, Q., Eisner, E., Zeng, Q., Báez-Becerra, C.T., Olness, J., Kern, J.C., Rink, J., Barcoma, A., Cho, S., Cao, S., Emerson, N., Lee, J., Willier, J., Loe, T., Jiao, H., Zu, S., Zhu, Q., Wang, A., Ecker, J.R., Behrens, M.M., Ren, B. Single-Cell Epigenomics Uncovers Heterochromatin Instability and Transcription Factor Dysfunction during Mouse Brain Aging. (2025) bioRxiv. DOI: 10.1101/2025.04.21.649585

+ Abstract erweitern


Lai , C., Arzavala, J., Pinto-Duarte, A., Wang, S., Li, J., Liu, H., Osteen, J., Gomez Castanon, R., Nery, J., Powell, S.B., Ecker, J.R., Mukamel, E., Behrens, M.M. Maternal Immune Activation Disrupts Epigenomic and Functional Maturation of Cortical Excitatory Neurons (2025) bioRxiv. DOI: https://doi.org/10.1101/2025.04.28.651094

+ Abstract erweitern


Zeng, Q., Wei, T., Klein, A., Bartlett, A., Liu, H., Nery, J.R., Castanon, R., Osteen, J., Johnson, N.D., Wang, W., Ding, W., Chen, H., Altshul, J., Kenworthy, M., Valadon, C., Owens, W., Wu, Z., Amaral, M.L., Song, Báez-Becerra, T.a.t.i.a.n.a., Cho, S., Chen, C., Willier, J., Cao, S., Rink, J., Lee, J., Barcoma, A., Arzavala, J., Emerson, N., Lu, Y.R., Ren, B., Behrens, M.a.r.g.a.r.i.t.a., Ecker, J.R. Cell-type-specific transposable element demethylation and TAD remodeling in the aging mouse brain (2025) bioRxiv. DOI: doi: https://doi.org/10.1101/2025.04.21.648266

+ Abstract erweitern


Chien, J.F., Liu, H., Wang, B.A., Luo, C., Bartlett, A., Castanon, R., Johnson, N.D., Nery, J.R., Osteen, J., Li, J., Altshul, J., Kenworthy, M., Valadon, C., Liem, M., Claffey, N., O'Connor, C., Seeker, L.A., Ecker, J.R., Behrens, M.M., Mukamel, E.A. Cell-type-specific effects of age and sex on human cortical neurons. (2024) Neuron. DOI: 10.1016/j.neuron.2024.05.013

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Zhou, J., Zhang, Z., Wu, M., Liu, H., Pang, Y., Bartlett, A., Peng, Z., Ding, W., Rivkin, A., Lagos, W.N., Williams, E., Lee, C.T., Miyazaki, P.A., Aldridge, A., Zeng, Q., Salinda, J.L.A., Claffey, N., Liem, M., Fitzpatrick, C., Boggeman, L., Yao, Z., Smith, K.A., Tasic, B., Altshul, J., Kenworthy, M.A., Valadon, C., Nery, J.R., Castanon, R.G., Patne, N.S., Vu, M., Rashid, M., Jacobs, M., Ito, T., Osteen, J., Emerson, N., Lee, J., Cho, S., Rink, J., Huang, H.H., Pinto-Duartec, A., Dominguez, B., Smith, J.B., O'Connor, C., Zeng, H., Chen, S., Lee, K.F., Mukamel, E.A., Jin, X., Margarita Behrens, M., Ecker, J.R., Callaway, E.M. Brain-wide correspondence of neuronal epigenomics and distant projections. (2023) Natur. 624(7991):355-365. DOI: 10.1038/s41586-023-06823-w

+ Abstract erweitern


Zemke, N.R., Armand, E.J., Wang, W., Lee, S., Zhou, J., Li, Y.E., Liu, H., Tian, W., Nery, J.R., Castanon, R.G., Bartlett, A., Osteen, J.K., Li, D., Zhuo, X., Xu, V., Chang, L., Dong, K., Indralingam, H.S., Rink, J.A., Xie, Y., Miller, M., Krienen, F.M., Zhang, Q., Taskin, N., Ting, J., Feng, G., McCarroll, S.A., Callaway, E.M., Wang, T., Lein, E.S., Behrens, M.M., Ecker, J.R., Ren, B. Conserved and divergent gene regulatory programs of the mammalian neocortex. (2023) Natur. 624(7991):390-402. DOI: 10.1038/s41586-023-06819-6

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Zu, S., Li, Y.E., Wang, K., Armand, E.J., Mamde, S., Amaral, M.L., Wang, Y., Chu, A., Xie, Y., Miller, M., Xu, J., Wang, Z., Zhang, K., Jia, B., Hou, X., Lin, L., Yang, Q., Lee, S., Li, B., Kuan, S., Liu, H., Zhou, J., Pinto-Duarte, A., Lucero, J., Osteen, J., Nunn, M., Smith, K.A., Tasic, B., Yao, Z., Zeng, H., Wang, Z., Shang, J., Behrens, M.M., Ecker, J.R., Wang, A., Preissl, S., Ren, B. Single-cell analysis of chromatin accessibility in the adult mouse brain. (2023) Natur. 624(7991):378-389. DOI: 10.1038/s41586-023-06824-9

+ Abstract erweitern


Liu, H., Zeng, Q., Zhou, J., Bartlett, A., Wang, B.A., Berube, P., Tian, W., Kenworthy, M., Altshul, J., Nery, J.R., Chen, H., Castanon, R.G., Zu, S., Li, Y.E., Lucero, J., Osteen, J.K., Pinto-Duarte, A., Lee, J., Rink, J., Cho, S., Emerson, N., Nunn, M., O'Connor, C., Wu, Z., Stoica, I., Yao, Z., Smith, K.A., Tasic, B., Luo, C., Dixon, J.R., Zeng, H., Ren, B., Behrens, M.M., Ecker, J.R. Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain. (2023) Natur. 624(7991):366-377. DOI: 10.1038/s41586-023-06805-y

+ Abstract erweitern


Mukamel, E.A., Liu, H., Behrens, M.M., Ecker, J.R. Cell type-specific enrichment of somatic aneuploidy in the mammalian brain. (2023) bioRxiv. DOI: 10.1101/2023.12.18.572285

+ Abstract erweitern


Tian, W., Zhou, J., Bartlett, A., Zeng, Q., Liu, H., Castanon, R.G., Kenworthy, M., Altshul, J., Valadon, C., Aldridge, A., Nery, J.R., Chen, H., Xu, J., Johnson, N.D., Lucero, J., Osteen, J.K., Emerson, N., Rink, J., Lee, J., Li, Y.E., Siletti, K., Liem, M., Claffey, N., O'Connor, C., Yanny, A.M., Nyhus, J., Dee, N., Casper, T., Shapovalova, N., Hirschstein, D., Ding, S.L., Hodge, R., Levi, B.P., Keene, C.D., Linnarsson, S., Lein, E., Ren, B., Behrens, M.M., Ecker, J.R. Single-cell DNA methylation and 3D genome architecture in the human brain. Link to free full-text https://doi.org/10.1126/science.adf5357 [Pubmed] (2023) Wissenschaft. 382(6667):eadf5357. DOI: 10.1126/science.adf5357

+ Abstract erweitern


Li, Y.E., Preissl, S., Miller, M., Johnson, N.D., Wang, Z., Jiao, H., Zhu, C., Wang, Z., Xie, Y., Poirion, O., Kern, C., Pinto-Duarte, A., Tian, W., Siletti, K., Emerson, N., Osteen, J., Lucero, J., Lin, L., Yang, Q., Zhu, Q., Zemke, N., Espinoza, S., Yanny, A.M., Nyhus, J., Dee, N., Casper, T., Shapovalova, N., Hirschstein, D., Hodge, R.D., Linnarsson, S., Bakken, T., Levi, B., Keene, C.D., Shang, J., Lein, E., Wang, A., Behrens, M.M., Ecker, J.R., Ren, B. A comparative atlas of single-cell chromatin accessibility in the human brain. (2023) Wissenschaft. 382(6667):eadf7044. DOI: 10.1126/science.adf7044

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Xie, F., Armand, E.J., Yao, Z., Liu, H., Bartlett, A., Behrens, M.M., Li, Y.E., Lucero, J.D., Luo, C., Nery, J.R., Pinto-Duarte, A., Poirion, O.B., Preissl, S., Rivkin, A.C., Tasic, B., Zeng, H., Ren, B., Ecker, J.R., Mukamel, E.A. Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes. (2023) Zellgenom. 3(7):100342. DOI: 10.1016/j.xgen.2023.100342

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Zemke, N.R., Armand, E.J., Wang, W., Lee, S., Zhou, J., Li, Y.E., Liu, H., Tian, W., Nery, J.R., Castanon, R.G., Bartlett, A., Osteen, J.K., Li, D., Zhuo, X., Xu, V., Miller, M., Krienen, F.M., Zhang, Q., Taskin, N., Ting, J., Feng, G., McCarroll, S.A., Callaway, E.M., Wang, T., Behrens, M.M., Lein, E.S., Ecker, J.R., Ren, B. Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex. (2023) bioRxiv. DOI: 10.1101/2023.04.08.536119

+ Abstract erweitern


Li, J., Pinto-Duarte, A., Zander, M., Cuoco, M.S., Lai, C.Y., Osteen, J., Fang, L., Luo, C., Lucero, J.D., Gomez-Castanon, R., Nery, J.R., Silva-Garcia, I., Pang, Y., Sejnowski, T.J., Powell, S.B., Ecker, J.R., Mukamel, E.A., Behrens, M.M. Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3. (2022) Elife. 11. DOI: 10.7554/eLife.66909

+ Abstract erweitern


Luo, C., Liu, H., Xie, F., Armand, E.J., Siletti, K., Bakken, T.E., Fang, R., Doyle, W.I., Stuart, T., Hodge, R.D., Hu, L., Wang, B.A., Zhang, Z., Preissl, S., Lee, D.S., Zhou, J., Niu, S.Y., Castanon, R., Bartlett, A., Rivkin, A., Wang, X., Lucero, J., Nery, J.R., Davis, D.A., Mash, D.C., Satija, R., Dixon, J.R., Linnarsson, S., Lein, E., Behrens, M.M., Ren, B., Mukamel, E.A., Ecker, J.R. Single nucleus multi-omics identifies human cortical cell regulatory genome diversity. (2022) Zellgenom. 2(3). DOI: 10.1016/j.xgen.2022.100107

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Liu, H., Zhou, J., Tian, W., Luo, C., Bartlett, A., Aldridge, A., Lucero, J., Osteen, J.K., Nery, J.R., Chen, H., Rivkin, A., Castanon, R.G., Clock, B., Li, Y.E., Hou, X., Poirion, O.B., Preissl, S., Pinto-Duarte, A., O'Connor, C., Boggeman, L., Fitzpatrick, C., Nunn, M., Mukamel, E.A., Zhang, Z., Callaway, E.M., Ren, B., Dixon, J.R., Behrens, M.M., Ecker, J.R. DNA methylation atlas of the mouse brain at single-cell resolution. (2021) Natur. 598(7879):120-128. DOI: 10.1038/s41586-020-03182-8

+ Abstract erweitern


Zhang, Z., Zhou, J., Tan, P., Pang, Y., Rivkin, A.C., Kirchgessner, M.A., Williams, E., Lee, C.T., Liu, H., Franklin, A.D., Miyazaki, P.A., Bartlett, A., Aldridge, A.I., Vu, M., Boggeman, L., Fitzpatrick, C., Nery, J.R., Castanon, R.G., Rashid, M., Jacobs, M.W., Ito-Cole, T., O'Connor, C., Pinto-Duartec, A., Dominguez, B., Smith, J.B., Niu, S.Y., Lee, K.F., Jin, X., Mukamel, E.A., Behrens, M.M., Ecker, J.R., Callaway, E.M. Epigenomic diversity of cortical projection neurons in the mouse brain. (2021) Natur. 598(7879):167-173. DOI: 10.1038/s41586-021-03223-w

+ Abstract erweitern


Li, Y.E., Preissl, S., Hou, X., Zhang, Z., Zhang, K., Qiu, Y., Poirion, O.B., Li, B., Chiou, J., Liu, H., Pinto-Duarte, A., Kubo, N., Yang, X., Fang, R., Wang, X., Han, J.Y., Lucero, J., Yan, Y., Miller, M., Kuan, S., Gorkin, D., Gaulton, K.J., Shen, Y., Nunn, M., Mukamel, E.A., Behrens, M.M., Ecker, J.R., Ren, B. An atlas of gene regulatory elements in adult mouse cerebrum. (2021) Natur. 598(7879):129-136. DOI: 10.1038/s41586-021-03604-1

+ Abstract erweitern


Yao, Z., Liu, H., Xie, F., Fischer, S., Adkins, R.S., Aldridge, A.I., Ament, S.A., Bartlett, A., Behrens, M.M., Van den Berge, K., Bertagnolli, D., de Bézieux, H.R., Biancalani, T., Booeshaghi, A.S., Bravo, H.C., Casper, T., Colantuoni, C., Crabtree, J., Creasy, H., Crichton, K., Crow, M., Dee, N., Dougherty, E.L., Doyle, W.I., Dudoit, S., Fang, R., Felix, V., Fong, O., Giglio, M., Goldy, J., Hawrylycz, M., Herb, B.R., Hertzano, R., Hou, X., Hu, Q., Kancherla, J., Kroll, M., Lathia, K., Li, Y.E., Lucero, J.D., Luo, C., Mahurkar, A., McMillen, D., Nadaf, N.M., Nery, J.R., Nguyen, T.N., Niu, S.Y., Ntranos, V., Orvis, J., Osteen, J.K., Pham, T., Pinto-Duarte, A., Poirion, O., Preissl, S., Purdom, E., Rimorin, C., Risso, D., Rivkin, A.C., Smith, K., Street, K., Sulc, J., Svensson, V., Tieu, M., Torkelson, A., Tung, H., Vaishnav, E.D., Vanderburg, C.R., van Velthoven, C., Wang, X., White, O.R., Huang, Z.J., Kharchenko, P.V., Pachter, L., Ngai, J., Regev, A., Tasic, B., Welch, J.D., Gillis, J., Macosko, E.Z., Ren, B., Ecker, J.R., Zeng, H., Mukamel, E.A. A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. (2021) Natur. 598(7879):103-110. DOI: 10.1038/s41586-021-03500-8

+ Abstract erweitern


Bakken, T.E., Jorstad, N.L., Hu, Q., Lake, B.B., Tian, W., Kalmbach, B.E., Crow, M., Hodge, R.D., Krienen, F.M., Sorensen, S.A., Eggermont, J., Yao, Z., Aevermann, B.D., Aldridge, A.I., Bartlett, A., Bertagnolli, D., Casper, T., Castanon, R.G., Crichton, K., Daigle, T.L., Dalley, R., Dee, N., Dembrow, N., Diep, D., Ding, S.L., Dong, W., Fang, R., Fischer, S., Goldman, M., Goldy, J., Graybuck, L.T., Herb, B.R., Hou, X., Kancherla, J., Kroll, M., Lathia, K., van Lew, B., Li, Y.E., Liu, C.S., Liu, H., Lucero, J.D., Mahurkar, A., McMillen, D., Miller, J.A., Moussa, M., Nery, J.R., Nicovich, P.R., Niu, S.Y., Orvis, J., Osteen, J.K., Owen, S., Palmer, C.R., Pham, T., Plongthongkum, N., Poirion, O., Reed, N.M., Rimorin, C., Rivkin, A., Romanow, W.J., Sedeño-Cortés, A.E., Siletti, K., Somasundaram, S., Sulc, J., Tieu, M., Torkelson, A., Tung, H., Wang, X., Xie, F., Yanny, A.M., Zhang, R., Ament, S.A., Behrens, M.M., Bravo, H.C., Chun, J., Dobin, A., Gillis, J., Hertzano, R., Hof, P.R., Höllt, T., Horwitz, G.D., Keene, C.D., Kharchenko, P.V., Ko, A.L., Lelieveldt, B.P., Luo, C., Mukamel, E.A., Pinto-Duarte, A., Preissl, S., Regev, A., Ren, B., Scheuermann, R.H., Smith, K., Spain, W.J., White, O.R., Koch, C., Hawrylycz, M., Tasic, B., Macosko, E.Z., McCarroll, S.A., Ting, J.T., Zeng, H., Zhang, K., Feng, G., Ecker, J.R., Linnarsson, S., Lein, E.S. Comparative cellular analysis of motor cortex in human, marmoset and mouse. (2021) Natur. 598(7879):111-119. DOI: 10.1038/s41586-021-03465-8

+ Abstract erweitern


Gao, C., Liu, J., Kriebel, A.R., Preissl, S., Luo, C., Castanon, R., Sandoval, J., Rivkin, A., Nery, J.R., Behrens, M.M., Ecker, J.R., Ren, B., Welch, J.D. Iterative single-cell multi-omic integration using online learning. (2021) Nature Biotechnology. DOI: 10.1038/s41587-021-00867-x

+ Abstract erweitern


Zhu, C., Zhang, Y., Li, Y.E., Lucero, J., Behrens, M.M., Ren, B. Joint profiling of histone modifications and transcriptome in single cells from mouse brain. (2021) Nature Methods. DOI: 10.1038/s41592-021-01060-3

+ Abstract erweitern


Fang, R., Preissl, S., Li, Y., Hou, X., Lucero, J., Wang, X., Motamedi, A., Shiau, A.K., Zhou, X., Xie, F., Mukamel, E.A., Zhang, K., Zhang, Y., Behrens, M.M., Ecker, J.R., Ren, B. Comprehensive analysis of single cell ATAC-seq data with SnapATAC. (2021) Nature Communications. 12(1):1337. DOI: 10.1038/s41467-021-21583-9

+ Abstract erweitern


Lavery, L.A., Ure, K., Wan, Y.W., Luo, C., Trostle, A.J., Wang, W., Jin, H., Lopez, J., Lucero, J., Durham, M.A., Castanon, R., Nery, J.R., Liu, Z., Goodell, M., Ecker, J.R., Behrens, M.M., Zoghbi, H.Y. Losing Dnmt3a dependent methylation in inhibitory neurons impairs neural function by a mechanism impacting Rett syndrome. (2020) Elife. 9. DOI: 10.7554/eLife.52981

+ Abstract erweitern


Zhu, C., Yu, M., Huang, H., Juric, I., Abnousi, A., Hu, R., Lucero, J., Behrens, M.M., Hu, M., Ren, B. An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome. (2019) Nature Structural & Molecular Biology. 26:1063–1070. DOI: 10.1038/s41594-019-0323-x

+ Abstract erweitern


Amodeo, D.A., Lai, C.Y., Hassan, O., Mukamel, E.A., Behrens, M.M., Powell, S.B. Maternal immune activation impairs cognitive flexibility and alters transcription in frontal cortex. (2019) Neurobiology of Disease. 125:211-218. DOI: 10.1016/j.nbd.2019.01.025

+ Abstract erweitern


Luo, C., Rivkin, A., Zhou, J., Sandoval, J.P., Kurihara, L., Lucero, J., Castanon, R., Nery, J.R., Pinto-Duarte, A., Bui, B., Fitzpatrick, C., O'Connor, C., Ruga, S., Van Eden, M.E., Davis, D.A., Mash, D.C., Behrens, M.M., Ecker, J.R. Robust single-cell DNA methylome profiling with snmC-seq2. (2018) Nature Communications. 9(1):3824. DOI: 10.1038/s41467-018-06355-2

+ Abstract erweitern


Wang, X., Pinto-Duarte, A., Behrens, M.M., Zhou, X., Sejnowski, T.J. Ketamine independently modulated power and phase-coupling of theta oscillations in Sp4 hypomorphic mice. (2018) PLOS One. 13(3):e0193446. DOI: 10.1371/journal.pone.0193446

+ Abstract erweitern


Luo, C., Keown, C.L., Kurihara, L., Zhou, J., He, Y., Li, J., Castanon, R., Lucero, J., Nery, J.R., Sandoval, J.P., Bui, B., Sejnowski, T.J., Harkins, T.T., Mukamel, E.A.*, Behrens, M.M.*, Ecker, J.R.* Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex. (2017) Wissenschaft. 357(6351):600-604. DOI: 10.1126/science.aan3351

+ Abstract erweitern


Khan, A., de Jong, L.A., Kamenski, M.E., Higa, K.K., Lucero, J.D., Young, J.W., Behrens, M.M.*, Powell, S.B.* Adolescent GBR12909 exposure induces oxidative stress, disrupts parvalbumin-positive interneurons, and leads to hyperactivity and impulsivity in adult mice. (2017) Neuroscience. 345:166-175. DOI: 10.1016/j.neuroscience.2016.11.022

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Jadi, M.P., Behrens, M.M., Sejnowski, T.J. Abnormal Gamma Oscillations in N-Methyl-D-Aspartate Receptor Hypofunction Models of Schizophrenia. (2016) Biological Psychiatry. 79(9):716-26. DOI: 10.1016/j.biopsych.2015.07.005

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Wang, X., Pinto-Duarte, A., Behrens, M.M., Zhou, X., Sejnowski, T.J. Characterization of spatio-temporal epidural event-related potentials for mouse models of psychiatric disorders. (2015) Wissenschaftliche Berichte. 5:14964. DOI: 10.1038/srep14964

+ Abstract erweitern


Barnes, S.A., Pinto-Duarte, A., Kappe, A., Zembrzycki, A., Metzler, A., Mukamel, E.A., Lucero, J., Wang, X., Sejnowski, T.J., Markou, A.*, Behrens, M.M.* Disruption of mGluR5 in parvalbumin-positive interneurons induces core features of neurodevelopmental disorders. (2015) Molecular Psychiatry. 20(10):1161-72. DOI: 10.1038/mp.2015.113

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Powell, S.B., Khan, A., Young, J.W., Scott, C.N., Buell, M.R., Caldwell, S., Tsan, E., de Jong, L.A., Acheson, D.T., Lucero, J., Geyer, M.A., Behrens, M.M. Early Adolescent Emergence of Reversal Learning Impairments in Isolation-Reared Rats. (2015) Developmental Neuroscience. 37(3):253-62. DOI: 10.1159/000430091

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Lister, R.*, Mukamel, E.A., Nery, J.R., Urich, M., Puddifoot, C.A., Johnson, N.D., Lucero, J., Huang, Y., Dwork, A.J., Schultz, M.D., Yu, M., Tonti-Filippini, J., Heyn, H., Hu, S., Wu, J.C., Rao, A., Esteller, M., He, C., Haghighi, F.G., Sejnowski, T.J., Behrens, M.M.*, Ecker, J.R.* Global epigenomic reconfiguration during mammalian brain development. (2013) Wissenschaft. 341(6146):1237905. DOI: 10.1126/science.1237905

+ Abstract erweitern


Ji, B., Wang, X., Pinto-Duarte, A., Kim, M., Caldwell, S., Young, J.W., Behrens, M.M., Sejnowski, T.J., Geyer, M.A., Zhou, X. Prolonged Ketamine Effects in Sp4 Hypomorphic Mice: Mimicking Phenotypes of Schizophrenia. (2013) PLOS One. 8(6):e66327. DOI: 10.1371/journal.pone.0066327

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Wang, X., Pinto-Duarte, A., Sejnowski, T.J., Behrens, M.M. How Nox2-containing NADPH oxidase affects cortical circuits in the NMDA receptor antagonist model of schizophrenia. (2013) Antioxidants & Redox Signaling. 18(12):1444-62. DOI: 10.1089/ars.2012.4907

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Powell, S.B., Sejnowski, T.J., Behrens, M.M. Behavioral and neurochemical consequences of cortical oxidative stress on parvalbumin-interneuron maturation in rodent models of schizophrenia. (2012) Neuropharmacology. 62(3):1322-31. DOI: 10.1016/j.neuropharm.2011.01.049

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Amitai, N., Kuczenski, R., Behrens, M.M., Markou, A. Repeated phencyclidine administration alters glutamate release and decreases GABA markers in the prefrontal cortex of rats. (2012) Neuropharmacology. 62(3):1422-31. DOI: 10.1016/j.neuropharm.2011.01.008

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Volman, V., Behrens, M.M., Sejnowski, T.J. Downregulation of parvalbumin at cortical GABA synapses reduces network gamma oscillatory activity. (2011) Journal of Neuroscience. 31(49):18137-48. DOI: 10.1523/JNEUROSCI.3041-11.2011

+ Abstract erweitern


Loomis, W.F., Behrens, M.M., Williams, M.E., Anjard, C. Pregnenolone sulfate and cortisol induce secretion of acyl-CoA-binding protein and its conversion into endozepines from astrocytes. (2010) Journal of biological chemistry. 285(28):21359-65. DOI: 10.1074/jbc.M110.105858

+ Abstract erweitern


Kinney, J.W., Sanchez-Alavez, M., Barr, A.M., Criado, J.R., Crawley, J.N., Behrens, M.M., Henriksen, S.J., Bartfai, T. Impairment of memory consolidation by galanin correlates with in vivo inhibition of both LTP and CREB phosphorylation. (2009) Neurobiology of Learning and Memory. 92(3):429-38. DOI: 10.1016/j.nlm.2009.06.005

+ Abstract erweitern


Behrens, M.M., Sejnowski, T.J. Does schizophrenia arise from oxidative dysregulation of parvalbumin-interneurons in the developing cortex? (2009) Neuropharmacology. 57(3):193-200. DOI: 10.1016/j.neuropharm.2009.06.002

+ Abstract erweitern


Dugan, L.L., Ali, S.S., Shekhtman, G., Roberts, A.J., Lucero, J., Quick, K.L., Behrens, M.M. IL-6 mediated degeneration of forebrain GABAergic interneurons and cognitive impairment in aged mice through activation of neuronal NADPH oxidase. (2009) PLOS One. 4(5):e5518. DOI: 10.1371/journal.pone.0005518

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Lodge, D.J., Behrens, M.M., Grace, A.A. A loss of parvalbumin-containing interneurons is associated with diminished oscillatory activity in an animal model of schizophrenia. (2009) Journal of neuroscience . 29(8):2344-54. DOI: 10.1523/JNEUROSCI.5419-08.2009

+ Abstract erweitern


Behrens, M.M., Ali, S.S., Dugan, L.L. Interleukin-6 mediates the increase in NADPH-oxidase in the ketamine model of schizophrenia. (2008) Journal of Neuroscience. 28(51):13957-66. DOI: 10.1523/JNEUROSCI.4457-08.2008

+ Abstract erweitern


Zhang, Y., Behrens, M.M., Lisman, J.E. Prolonged exposure to NMDAR antagonist suppresses inhibitory synaptic transmission in prefrontal cortex. (2008) Journal of Neurophysiology. 100(2):959-65. DOI: 10.1152/jn.00079.2008

+ Abstract erweitern


Behrens, M.M.*, Ali, S.S., Dao, D.N., Lucero, J., Shekhtman, G., Quick, K.L., Dugan, L.L.* Ketamine-induced loss of phenotype of fast-spiking interneurons is mediated by NADPH-oxidase. (2007) Wissenschaft. 318(5856):1645-7. DOI: 10.1126/science.1148045

+ Abstract erweitern


Ali, S.S., Xiong, C., Lucero, J., Behrens, M.M., Dugan, L.L., Quick, K.L. Gender differences in free radical homeostasis during aging: shorter-lived female C57BL6 mice have increased oxidative stress. (2006) Alternde Zelle. 5(6):565-74. DOI: 10.1111/j.1474-9726.2006.00252.x

+ Abstract erweitern


Davis, C.N., Tabarean, I., Gaidarova, S., Behrens, M.M., Bartfai, T. IL-1beta induces a MyD88-dependent and ceramide-mediated activation of Src in anterior hypothalamic neurons. (2006) J. Neurochem. 98(5):1379-89. DOI: 10.1111/j.1471-4159.2006.03951.x

+ Abstract erweitern


Davis, C.N., Mann, E., Behrens, M.M., Gaidarova, S., Rebek, M., Rebek, J., Bartfai, T. MyD88-dependent and -independent signaling by IL-1 in neurons probed by bifunctional Toll/IL-1 receptor domain/BB-loop mimetics. (2006) Proceedings of the National Academy of Sciences of the United States of America. 103(8):2953-8. DOI: 10.1073/pnas.0510802103

+ Abstract erweitern


Sanchez-Alavez, M., Tabarean, I.V., Behrens, M.M., Bartfai, T. Ceramide mediates the rapid phase of febrile response to IL-1beta. (2006) Proceedings of the National Academy of Sciences of the United States of America. 103(8):2904-8. DOI: 10.1073/pnas.0510960103

+ Abstract erweitern


Kinney, J.W., Davis, C.N., Tabarean, I., Conti, B., Bartfai, T., Behrens, M.M. A specific role for NR2A-containing NMDA receptors in the maintenance of parvalbumin and GAD67 immunoreactivity in cultured interneurons. (2006) Journal of Neuroscience. 26(5):1604-15. DOI: 10.1523/JNEUROSCI.4722-05.2006

+ Abstract erweitern


Tabarean, I.V., Conti, B., Behrens, M.M., Korn, H., Bartfai (2005) Neuroscience. 135(2):433-449. DOI: https://doi.org/10.1016/j.neuroscience.2005.06.053

+ Abstract erweitern


Badie-Mahdavi, H., Behrens, M.M., Rebek, J., Bartfai, T. Effect of galnon on induction of long-term potentiation in dentate gyrus of C57BL/6 mice. (2005) Neuropeptides. 39(3):249-51. DOI: 10.1016/j.npep.2004.12.010

+ Abstract erweitern


Badie-Mahdavi, H., Lu, X., Behrens, M.M., Bartfai, T. Role of galanin receptor 1 and galanin receptor 2 activation in synaptic plasticity associated with 3',5'-cyclic AMP response element-binding protein phosphorylation in the dentate gyrus: studies with (2005) Neuroscience. 133(2):591-604. DOI: 10.1016/j.neuroscience.2005.02.042

+ Abstract erweitern


Conti, B., Sugama, S., Lucero, J., Winsky-Sommerer, R., Wirz, S.A., Maher, P., Andrews, Z., Barr, A.M., Morale, M.C., Paneda, C., Pemberton, J., Gaidarova, S., Behrens, M.M., Beal, F., Sanna, P.P., Horvath, T., Bartfai, T. Uncoupling protein 2 protects dopaminergic neurons from acute 1,2,3,6-methyl-phenyl-tetrahydropyridine toxicity. (2005) Journal of Neurochemistry. 93(2):493-501. DOI: 10.1111/j.1471-4159.2005.03052.x

+ Abstract erweitern


Lu, X., Barr, A.M., Kinney, J.W., Sanna, P., Conti, B., Behrens, M.M., Bartfai, T. A role for galanin in antidepressant actions with a focus on the dorsal raphe nucleus. (2005) Proceedings of the National Academy of Sciences of the United States of America. 102(3):874-9. DOI: 10.1073/pnas.0408891102

+ Abstract erweitern


Dubé, C., Vezzani, A., Behrens, M., Bartfai, T., Baram, T.Z. Interleukin-1beta contributes to the generation of experimental febrile seizures. (2005) Ann. Neurol. 57(1):152-5. DOI: 10.1002/ana.20358

+ Abstract erweitern


Tabarean, I.V., Behrens, M.M., Bartfai, T., Korn, H. Prostaglandin E2-increased thermosensitivity of anterior hypothalamic neurons is associated with depressed inhibition. (2004) Proceedings of the National Academy of Sciences of the United States of America. 101(8):2590-5. DOI: 10.1073/pnas.0308718101

+ Abstract erweitern


Kim, H.J., Hwang, J.J., Behrens, M.M., Snider, B.J., Choi, D.W., Koh, J.Y. TrkB mediates BDNF-induced potentiation of neuronal necrosis in cortical culture. (2003) Neurobiol. Dis. 14(1):110-9.

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Viviani, B., Bartesaghi, S., Gardoni, F., Vezzani, A., Behrens, M.M., Bartfai, T., Binaglia, M., Corsini, E., Di Luca, M., Galli, C.L., Marinovich, M. Interleukin-1beta enhances NMDA receptor-mediated intracellular calcium increase through activation of the Src family of kinases. (2003) Journal of Neuroscience. 23(25):8692-700.

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Bartfai, T., Behrens, M.M., Gaidarova, S., Pemberton, J., Shivanyuk, A., Rebek, J. A low molecular weight mimic of the Toll/IL-1 receptor/resistance domain inhibits IL-1 receptor-mediated responses. (2003) Proceedings of the National Academy of Sciences of the United States of America. 100(13):7971-6. DOI: 10.1073/pnas.0932746100

+ Abstract erweitern


Heidinger, V., Manzerra, P., Wang, X.Q., Strasser, U., Yu, S.P., Choi, D.W., Behrens, M.M. Metabotropic glutamate receptor 1-induced upregulation of NMDA receptor current: mediation through the Pyk2/Src-family kinase pathway in cortical neurons. (2002) Journal of Neuroscience. 22(13):5452-61. DOI: 20026565

+ Abstract erweitern


Manzerra, P., Behrens, M.M., Canzoniero, L.M., Wang, X.Q., Heidinger, V., Ichinose, T., Yu, S.P., Choi, D.W. Zinc induces a Src family kinase-mediated up-regulation of NMDA receptor activity and excitotoxicity. (2001) Proceedings of the National Academy of Sciences of the United States of America. 98(20):11055-61. DOI: 10.1073/pnas.191353598

+ Abstract erweitern


Moreno-Bueno, G., Calés, C., Behrens, M.M., Fernández-Renart, M. Isolation and characterization of casein kinase I from Dictyostelium discoideum. (2000) Biochemical Journal. 349(Pt 2):527-37. DOI: 10.1042/0264-6021:3490527

+ Abstract erweitern


Sheline, C.T., Behrens, M.M., Choi, D.W. Zinc-induced cortical neuronal death: contribution of energy failure attributable to loss of NAD(+) and inhibition of glycolysis. (2000) Journal of Neuroscience. 20(9):3139-46.

+ Abstract erweitern


Behrens, M.M., Strasser, U., Heidinger, V., Lobner, D., Yu, S.P., McDonald, J.W., Won, M., Choi, D.W. Selective activation of group II mGluRs with LY354740 does not prevent neuronal excitotoxicity. (1999) Neuropharmacology. 38(10):1621-30. DOI: 10.1016/s0028-3908(99)00098-2

+ Abstract erweitern


Behrens, M.M., Strasser, U., Koh, J.Y., Gwag, B.J., Choi, D.W. Prevention of neuronal apoptosis by phorbol ester-induced activation of protein kinase C: blockade of p38 mitogen-activated protein kinase. (1999) Neuroscience. 94(3):917-27. DOI: 10.1016/s0306-4522(99)00212-2

+ Abstract erweitern


Behrens, M.M., Strasser, U., Lobner, D., Dugan, L.L. Neurotrophin-mediated potentiation of neuronal injury. (1999) Microsc. Res. Tech. 45(4-5):276-84. DOI: 10.1002/(SICI)1097-0029(19990515/01)45:4/5<276::AI

+ Abstract erweitern


Behrens, M.M., Strasser, U., Choi, D.W. Gö 6976 is a potent inhibitor of neurotrophin-receptor intrinsic tyrosine kinase. (1999) J. Neurochem. 72(3):919-24. DOI: 10.1046/j.1471-4159.1999.0720919.x

+ Abstract erweitern


García-Gallo, M., Behrens, M.M., Renart, J., Díaz-Guerra, M. Expression of N-methyl-D-aspartate receptors using vaccinia virus causes excitotoxic death in human kidney cells. (1999) J. Cell. Biochem. 72(1):135-44.

+ Abstract erweitern


Strasser, U., Lobner, D., Behrens, M.M., Canzoniero, L.M., Choi, D.W. Antagonists for group I mGluRs attenuate excitotoxic neuronal death in cortical cultures. (1998) European Journal of Neuroscience. 10(9):2848-55. DOI: 10.1111/j.1460-9568.1998.00291.x

+ Abstract erweitern


Martínez, J.L., Behrens, M.M., Moratilla, C., Renart, J. Oleoylanilide, a possible causative agent of toxic oil syndrome, interferes with the cytoskeleton in a neuronal cell line. (1997) Neurotoxicology and Teratology. 19(2):147-50.

+ Abstract erweitern


Boland, K., Behrens, M., Choi, D., Manias, K., Perlmutter, D.H. The serpin-enzyme complex receptor recognizes soluble, nontoxic amyloid-beta peptide but not aggregated, cytotoxic amyloid-beta peptide. (1996) Journal of Biological Chemistry. 271(30):18032-44. DOI: 10.1074/jbc.271.30.18032

+ Abstract erweitern


Hewett, S.J., Misko, T.P., Keeling, R.M., Behrens, M.M., Choi, D.W., Cross, A.H. Murine encephalitogenic lymphoid cells induce nitric oxide synthase in primary astrocytes. (1996) Journal of Neuroimmunology. 64(2):201-8.

+ Abstract erweitern


Gwag, B.J., Koh, J.Y., Chen, M.M., Dugan, L.L., Behrens, M.M., Lobner, D., Choi, D.W. BDNF or IGF-I potentiates free radical-mediated injury in cortical cell cultures. (1995) Neuroreport. 7(1):93-6.

+ Abstract erweitern


Behrens, M.M., Martínez, J.L., Moratilla, C., Renart, J. Apoptosis induced by protein kinase C inhibition in a neuroblastoma cell line. (1995) Cell Growth & Differentiation. 6(11):1375-80.

+ Abstract erweitern


Franco, E., Behrens, M.M., Díaz-Guerra, M., Renart, J. Structure and expression of a polyubiquitin gene from the crustacean Artemia. (1994) Gene Expression. 4(1-2):19-28.

+ Abstract erweitern


Mazón, M.J., Behrens, M.M., Morgado, E., Portillo, F. Low activity of the yeast cAMP-dependent protein kinase catalytic subunit Tpk3 is due to the poor expression of the TPK3 gene. (1993) European Journal of Biochemistry. 213(1):501-6. DOI: 10.1111/j.1432-1033.1993.tb17787.x

+ Abstract erweitern


Schwandner, W.R., Jiménez, B., Schwartz, A., Weijer, C.J., Behrens, M., Mazón, M.J., Fernández-Renart, M. Chemotactic stimulation of aggregation-stage Dictyostelium cells induces rapid changes in energy metabolism, as measured by succinic thiokinase phosphorylation. (1993) Biochimica et Biophysica Acta. 1176(1-2):175-82. DOI: 10.1016/0167-4889(93)90194-t

+ Abstract erweitern


Mazón, M.J., Behrens, M.M., Portillo, F., Piñón, R. cAMP- and RAS-independent nutritional regulation of plasma-membrane H+-ATPase activity in Saccharomyces cerevisiae. (1989) J. Gen. Microbiol. 135(6):1453-60. DOI: 10.1099/00221287-135-6-1453

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Behrens, M.M., Mazón, M.J. Yeast cAMP-dependent protein kinase can be associated to the plasma membrane. (1988) Biochemical and Biophysical Research Communications. 151(1):561-7. DOI: 10.1016/0006-291x(88)90631-6

+ Abstract erweitern


Bildung

BS, Biochemistry, University of Chile
MS, Biochemistry, University of Chile
PhD, Biochemistry and Molecular Biology, University Autonoma, Spain
Postdoctoral Fellowship, Washington University School of Medicine


Auszeichnungen & Ehrungen

  • The Kavli Institute for Brain And Mind Innovative Research Grant, 2018
  • NARSAD Young Investigator Award, 2009
  • Daniel X. Freedman Award Honorable Mention, 2008
  • NARSAD Young Investigator Award, 2004
  • European Molecular Biology Organization Fellowship, 1991
  • Cold Spring Harbor Laboratory Fellowship, 1989
  • Federation of European Biochemical Societies Predoctoral Fellowship, 1988