Waitt Advanced Biophotonics Center

Publications

Salk Institute for Biological Studies - Waitt Advanced Biophotonics Center - Publications

Publications 2018


Fleischer JG, Schulte R, Tsai HH, Tyagi S, Ibarra A, Shokhirev MN, Huang L, Hetzer MW, Navlakha S. Genome Biol. 2018 Dec 20;19(1):221. doi: 10.1186/s13059-018-1599-6.
PMID: 30567591


Kuhn HG, Toda T, Gage FH.

J Neurosci. 2018 Dec 5;38(49):10401-10410. doi: 10.1523/JNEUROSCI.2144-18.2018. Epub 2018 Oct 31. Review. PMID: 30381404


Mertens J, Reid D, Lau S, Kim Y, Gage FH.

Annu Rev Genet. 2018 Nov 23;52:271-293. doi: 10.1146/annurev-genet-120417-031534. Epub 2018 Sep 12. Review. PMID: 30208291


Suh H, Zhou QG, Fernandez-Carasa I, Clemenson GD Jr, Pons-Espinal M, Ro EJ, Marti M, Raya A, Gage FH, Consiglio A.

Front Mol Neurosci. 2018 Nov 15;11:415. doi: 10.3389/fnmol.2018.00415. eCollection 2018.

PMID: 30498432


Cereb Cortex. 2018 Oct 1;28(10):3623-3637. doi: 10.1093/cercor/bhx235. PMID: 29029039


McCloskey A, Ibarra A, Hetzer MW.

Genes Dev. 2018 Oct 1;32(19-20):1321-1331. doi: 10.1101/gad.315523.118. Epub 2018 Sep 18.

PMID: 30228202


Reddy G, Wong-Ng J, Celani A, Sejnowski TJ, Vergassola M.

Nature. 2018 Oct;562(7726):236-239. doi: 10.1038/s41586-018-0533-0. Epub 2018 Sep 19.

PMID: 30232456


Choi SH, Bylykbashi E, Chatila ZK, Lee SW, Pulli B, Clemenson GD, Kim E, Rompala A, Oram MK, Asselin C, Aronson J, Zhang C, Miller SJ, Lesinski A, Chen JW, Kim DY, van Praag H, Spiegelman BM, Gage FH, Tanzi RE.

Science. 2018 Sep 7;361(6406). pii: eaan8821. doi: 10.1126/science.aan8821.

PMID: 30190379


Eftekharzadeh B, Daigle JG, Kapinos LE, Coyne A, Schiantarelli J, Carlomagno Y, Cook C, Miller SJ, Dujardin S, Amaral AS, Grima JC, Bennett RE, Tepper K, DeTure M, Vanderburg CR, Corjuc BT, DeVos SL, Gonzalez JA, Chew J, Vidensky S, Gage FH, Mertens J, Troncoso J, Mandelkow E, Salvatella X, Lim RYH, Petrucelli L, Wegmann S, Rothstein JD, Hyman BT.

Neuron. 2018 Sep 5;99(5):925-940.e7. doi: 10.1016/j.neuron.2018.07.039. Erratum in:  Neuron. 2019 Jan 16;101(2):349 . PMID: 30189209


Zhang Y, Liu S, Zhang YQ, Goulding M, Wang YQ, Ma Q.

Neuron. 2018 Sep 5;99(5):941-955.e4. doi: 10.1016/j.neuron.2018.07.026. Epub 2018 Aug 16.

PMID: 30122375


Toda T, Gage FH.

Cell Tissue Res. 2018 Sep;373(3):693-709. doi: 10.1007/s00441-017-2735-4. Epub 2017 Nov 29. Review. PMID: 29185071


Zhou Y, Smith BH, Sharpee TO.

Sci Adv. 2018 Aug 29;4(8):eaaq1458. doi: 10.1126/sciadv.aaq1458. eCollection 2018 Aug.

PMID: 30167457


van den Hurk M, Erwin JA, Yeo GW, Gage FH, Bardy C.

Front Mol Neurosci. 2018 Aug 10;11:261. doi: 10.3389/fnmol.2018.00261. eCollection 2018. Erratum in:  Front Mol Neurosci. 2019 Jun 11;12:150 . PMID: 30147644


Jaeger BN, Linker SB, Parylak SL, Barron JJ, Gallina IS, Saavedra CD, Fitzpatrick C, Lim CK, Schafer ST, Lacar B, Jessberger S, Gage FH.

Nat Commun. 2018 Aug 6;9(1):3084. doi: 10.1038/s41467-018-05418-8.

PMID: 30082781


Haas KT, Compans B, Letellier M, Bartol TM, Grillo-Bosch D, Sejnowski TJ, Sainlos M, Choquet D, Thoumine O, Hosy E.

Elife. 2018 Jul 25;7. pii: e31755. doi: 10.7554/eLife.31755. PMID: 30044218


Ernst OK, Bartol T, Sejnowski T, Mjolsness E.

J Chem Phys. 2018 Jul 21;149(3):034107. doi: 10.1063/1.5026403. PMID: 30037235


Sommer A, Marxreiter F, Krach F, Fadler T, Grosch J, Maroni M, Graef D, Eberhardt E, Riemenschneider MJ, Yeo GW, Kohl Z, Xiang W, Gage FH, Winkler J, Prots I, Winner B.

Cell Stem Cell. 2018 Jul 5;23(1):123-131.e6. doi: 10.1016/j.stem.2018.06.015. Erratum in:  Cell Stem Cell. 2019 Jun 6;24(6):1006

PMID: 29979986


Kempermann G, Gage FH, Aigner L, Song H, Curtis MA, Thuret S, Kuhn HG, Jessberger S, Frankland PW, Cameron HA, Gould E, Hen R, Abrous DN, Toni N, Schinder AF, Zhao X, Lucassen PJ, Frisén J.

Cell Stem Cell. 2018 Jul 5;23(1):25-30. doi: 10.1016/j.stem.2018.04.004. Epub 2018 Apr 19. Review. PMID: 29681514


Siddharth, Jung TP, Sejnowski TJ.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:291-294. doi: 10.1109/EMBC.2018.8512320.

PMID: 30440395


Shahsavani M, Pronk RJ, Falk R, Lam M, Moslem M, Linker SB, Salma J, Day K, Schuster J, Anderlid BM, Dahl N, Gage FH, Falk A.

Mol Psychiatry. 2018 Jul;23(7):1674-1684. doi: 10.1038/mp.2017.175. Epub 2017 Sep 19.

PMID: 28924182


Erwin JA, Paquola ACM, Singer T, Gallina I, Novotny M, Quayle C, Bedrosian TA, Alves FIA, Butcher CR, Herdy JR, Sarkar A, Lasken RS, Muotri AR, Gage FH.

Nat Neurosci. 2018 Jul;21(7):1016. doi: 10.1038/s41593-018-0131-3.

PMID: 29703932


Patriarchi T, Cho JR, Merten K, Howe MW, Marley A, Xiong WH, Folk RW, Broussard GJ, Liang R, Jang MJ, Zhong H, Dombeck D, von Zastrow M, Nimmerjahn A, Gradinaru V, Williams JT, Tian L.

Science. 2018 Jun 29;360(6396). pii: eaat4422. doi: 10.1126/science.aat4422. Epub 2018 May 31.

PMID: 29853555


Krishnan GP, Rosen BQ, Chen JY, Muller L, Sejnowski TJ, Cash SS, Halgren E, Bazhenov M.

PLoS Comput Biol. 2018 Jun 27;14(6):e1006171. doi: 10.1371/journal.pcbi.1006171. eCollection 2018 Jun. PMID: 29949575


Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJP, Dougherty ML, Munson KM, Hastie AR, Diekhans M, Hormozdiari F, Lorusso N, Hoekzema K, Qiu R, Clark K, Raja A, Welch AE, Sorensen M, Baker C, Fulton RS, Armstrong J, Graves-Lindsay TA, Denli AM, Hoppe ER, Hsieh P, Hill CM, Pang AWC, Lee J, Lam ET, Dutcher SK, Gage FH, Warren WC, Shendure J, Haussler D, Schneider VA, Cao H, Ventura M, Wilson RK, Paten B, Pollen A, Eichler EE.

Science. 2018 Jun 8;360(6393). pii: eaar6343. doi: 10.1126/science.aar6343.

PMID: 29880660


Jaeger BN, Parylak SL, Gage FH.

Mol Aspects Med. 2018 Jun;61:50-62. doi: 10.1016/j.mam.2017.11.003. Epub 2017 Nov 9. Review. PMID: 29117513


Stern S, Santos R, Marchetto MC, Mendes APD, Rouleau GA, Biesmans S, Wang QW, Yao J, Charnay P, Bang AG, Alda M, Gage FH.

Mol Psychiatry. 2018 Jun;23(6):1453-1465. doi: 10.1038/mp.2016.260. Epub 2017 Feb 28.

PMID: 28242870


Mansour AA, Gonçalves JT, Bloyd CW, Li H, Fernandes S, Quang D, Johnston S, Parylak SL, Jin X, Gage FH.

Nat Biotechnol. 2018 Jun;36(5):432-441. doi: 10.1038/nbt.4127. Epub 2018 Apr 16.

PMID: 29658944


Zheng Y, Shen W, Zhang J, Yang B, Liu YN, Qi H, Yu X, Lu SY, Chen Y, Xu YZ, Li Y, Gage FH, Mi S, Yao J. Nat Neurosci. 2018 Jun;21(6):894. doi: 10.1038/s41593-018-0125-1. PMID: 29545585


Kim Y, Zheng X, Ansari Z, Bunnell MC, Herdy JR, Traxler L, Lee H, Paquola ACM, Blithikioti C, Ku M, Schlachetzki JCM, Winkler J, Edenhofer F, Glass CK, Paucar AA, Jaeger BN, Pham S, Boyer L, Campbell BC, Hunter T, Mertens J, Gage FH.

Cell Rep. 2018 May 29;23(9):2550-2558. doi: 10.1016/j.celrep.2018.04.105.

PMID: 29847787


Moldakarimov S, Bazhenov M, Feldman DE, Sejnowski TJ.

Proc Natl Acad Sci U S A. 2018 May 15;115(20):5277-5282. doi: 10.1073/pnas.1710202115. Epub 2018 Apr 30.

PMID: 29712831


Strnadel J, Carromeu C, Bardy C, Navarro M, Platoshyn O, Glud AN, Marsala S, Kafka J, Miyanohara A, Kato T Jr, Tadokoro T, Hefferan MP, Kamizato K, Yoshizumi T, Juhas S, Juhasova J, Ho CS, Kheradmand T, Chen P, Bohaciakova D, Hruska-Plochan M, Todd AJ, Driscoll SP, Glenn TD, Pfaff SL, Klima J, Ciacci J, Curtis E, Gage FH, Bui J, Yamada K, Muotri AR, Marsala M.

Sci Transl Med. 2018 May 9;10(440). pii: eaam6651. doi: 10.1126/scitranslmed.aam6651.

PMID: 29743351


Ruiz-Martínez Á, Bartol TM, Sejnowski TJ, Tartakovsky DM.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):4933-4938. doi: 10.1073/pnas.1719391115. Epub 2018 Apr 23. PMID: 29686085


Sarkar A, Mei A, Paquola ACM, Stern S, Bardy C, Klug JR, Kim S, Neshat N, Kim HJ, Ku M, Shokhirev MN, Adamowicz DH, Marchetto MC, Jappelli R, Erwin JA, Padmanabhan K, Shtrahman M, Jin X, Gage FH.

Cell Stem Cell. 2018 May 3;22(5):684-697.e9. doi: 10.1016/j.stem.2018.04.009.

PMID: 29727680


Ueno M, Nakamura Y, Li J, Gu Z, Niehaus J, Maezawa M, Crone SA, Goulding M, Baccei ML, Yoshida Y.

Cell Rep. 2018 May 1;23(5):1286-1300.e7. doi: 10.1016/j.celrep.2018.03.137.

PMID: 29719245


Muller L, Chavane F, Reynolds J, Sejnowski TJ.

Nat Rev Neurosci. 2018 May;19(5):255-268. doi: 10.1038/nrn.2018.20. Epub 2018 Mar 22. Review. PMID: 29563572


Stern S, Linker S, Vadodaria KC, Marchetto MC, Gage FH.

Open Biol. 2018 May;8(5). pii: 180031. doi: 10.1098/rsob.180031. Review.

PMID: 29794033


Luo L, Callaway EM, Svoboda K.

Neuron. 2018 Apr 18;98(2):256-281. doi: 10.1016/j.neuron.2018.03.040. Review. Erratum in:  Neuron. 2018 May 16;98 (4):865

PMID: 29673479


Bedrosian TA, Quayle C, Novaresi N, Gage FH.

Science. 2018 Mar 23;359(6382):1395-1399. doi: 10.1126/science.aah3378.

PMID: 29567711


Gatto G, Goulding M.

Curr Biol. 2018 Mar 19;28(6):R256-R259. doi: 10.1016/j.cub.2018.01.068.

PMID: 29558639


Mo Z, Zhao X, Liu H, Hu Q, Chen XQ, Pham J, Wei N, Liu Z, Zhou J, Burgess RW, Pfaff SL, Caskey CT, Wu C, Bai G, Yang XL.

Nat Commun. 2018 Mar 8;9(1):1007. doi: 10.1038/s41467-018-03461-z.

PMID: 29520015


Wang X, Pinto-Duarte A, Behrens MM, Zhou X, Sejnowski TJ.

PLoS One. 2018 Mar 7;13(3):e0193446. doi: 10.1371/journal.pone.0193446. eCollection 2018.

PMID: 29513708


Bromer C, Bartol TM, Bowden JB, Hubbard DD, Hanka DC, Gonzalez PV, Kuwajima M, Mendenhall JM, Parker PH, Abraham WC, Sejnowski TJ, Harris KM.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2410-E2418. doi: 10.1073/pnas.1716189115. Epub 2018 Feb 20. PMID: 29463730


Zheng Y, Shen W, Zhang J, Yang B, Liu YN, Qi H, Yu X, Lu SY, Chen Y, Xu YZ, Li Y, Gage FH, Mi S, Yao J.

Nat Neurosci. 2018 Mar;21(3):447-454. doi: 10.1038/s41593-018-0077-5. Epub 2018 Feb 5. Erratum in:  Nat Neurosci. 2018 Mar 15;:

PMID: 29403034


Hayashi M, Hinckley CA, Driscoll SP, Moore NJ, Levine AJ, Hilde KL, Sharma K, Pfaff SL.

Neuron. 2018 Feb 21;97(4):869-884.e5. doi: 10.1016/j.neuron.2018.01.023. Epub 2018 Feb 1.

PMID: 29398364


Wang M, He Y, Sejnowski TJ, Yu X.

Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):E1647-E1656. doi: 10.1073/pnas.1711692115. Epub 2018 Jan 30. PMID: 29382752


Koch SC, Acton D, Goulding M.

Annu Rev Physiol. 2018 Feb 10;80:189-217. doi: 10.1146/annurev-physiol-022516-034303. Epub 2017 Sep 27. Review. PMID: 28961064


Kaya C, Cheng MH, Block ER, Bartol TM, Sejnowski TJ, Sorkin A, Faeder JR, Bahar I.

eNeuro. 2018 Feb 5;5(1). pii: ENEURO.0298-17.2017. doi: 10.1523/ENEURO.0298-17.2017. eCollection 2018 Jan-Feb. PMID: 29430519


Vadodaria KC, Amatya DN, Marchetto MC, Gage FH.

Genome Med. 2018 Jan 4;10(1):1. doi: 10.1186/s13073-017-0512-3.

PMID: 29301565


Vadodaria KC, Stern S, Marchetto MC, Gage FH.

Cell Tissue Res. 2018 Jan;371(1):161-170. doi: 10.1007/s00441-017-2670-4. Epub 2017 Aug 15. Review. PMID: 28812143


Snijders C, de Nijs L, Baker DG, Hauger RL, van den Hove D, Kenis G, Nievergelt CM, Boks MP, Vermetten E, Gage FH, Rutten BPF.

Curr Top Behav Neurosci. 2018;38:23-46. doi: 10.1007/7854_2017_32. Review.

PMID: 29063484