Waitt Advanced Biophotonics Center

Publications

Salk Institute for Biological Studies - Waitt Advanced Biophotonics Center - Publications

Publications 2015


Sarkar A, Marchetto MC, Gage FH.

Brain Res. 2017 Feb 1;1656:68-75. doi: 10.1016/j.brainres.2015.12.028. Epub 2015 Dec 23. Review.

PMID: 26723567


Geeven G, Zhu Y, Kim BJ, Bartholdy BA, Yang SM, Macfarlan TS, Gifford WD, Pfaff SL, Verstegen MJ, Pinto H, Vermunt MW, Creyghton MP, Wijchers PJ, Stamatoyannopoulos JA, Skoultchi AI, de Laat W.

Genome Biol. 2015 Dec 23;16:289. doi: 10.1186/s13059-015-0857-0.

PMID: 26700097


Harrison BJ, Venkat G, Hutson T, Rau KK, Bunge MB, Mendell LM, Gage FH, Johnson RD, Hill C, Rouchka EC, Moon L, Petruska JC.

Genom Data. 2015 Oct 23;6:249-52. doi: 10.1016/j.gdata.2015.10.005. eCollection 2015 Dec.

PMID: 26697387


Amin ND, Bai G, Klug JR, Bonanomi D, Pankratz MT, Gifford WD, Hinckley CA, Sternfeld MJ, Driscoll SP, Dominguez B, Lee KF, Jin X, Pfaff SL.

Science. 2015 Dec 18;350(6267):1525-9. doi: 10.1126/science.aad2509.

PMID: 26680198


Vadodaria KC, Mertens J, Paquola A, Bardy C, Li X, Jappelli R, Fung L, Marchetto MC, Hamm M, Gorris M, Koch P, Gage FH.

Mol Psychiatry. 2016 Jan;21(1):3. doi: 10.1038/mp.2015.202. No abstract available. 

PMID: 26678308


Kim EJ, Juavinett AL, Kyubwa EM, Jacobs MW, Callaway EM.

Neuron. 2015 Dec 16;88(6):1253-1267. doi: 10.1016/j.neuron.2015.11.002. Epub 2015 Dec 6.

PMID: 26671462


Bartol TM, Bromer C, Kinney J, Chirillo MA, Bourne JN, Harris KM, Sejnowski TJ.

Elife. 2015 Nov 30;4:e10778. doi: 10.7554/eLife.10778.

PMID: 26618907


Duricki DA, Hutson TH, Kathe C, Soleman S, Gonzalez-Carter D, Petruska JC, Shine HD, Chen Q, Wood TC, Bernanos M, Cash D, Williams SC, Gage FH, Moon LD.

Brain. 2016 Jan;139(Pt 1):259-75. doi: 10.1093/brain/awv341. Epub 2015 Nov 27.

PMID: 26614754


Brennand KJ, Marchetto MC, Benvenisty N, Brüstle O, Ebert A, Izpisua Belmonte JC, Kaykas A, Lancaster MA, Livesey FJ, McConnell MJ, McKay RD, Morrow EM, Muotri AR, Panchision DM, Rubin LL, Sawa A, Soldner F, Song H, Studer L, Temple S, Vaccarino FM, Wu J, Vanderhaeghen P, Gage FH, Jaenisch R.

Stem Cell Reports. 2015 Dec 8;5(6):933-945. doi: 10.1016/j.stemcr.2015.10.011. Epub 2015 Nov 21.

PMID: 26610635


Johnston ST, Shtrahman M, Parylak S, Gonçalves JT, Gage FH.

Neurobiol Learn Mem. 2016 Mar;129:60-8. doi: 10.1016/j.nlm.2015.10.013. Epub 2015 Nov 6. Review.

PMID: 26549627


Kim HJ, Denli AM, Wright R, Baul TD, Clemenson GD, Morcos AS, Zhao C, Schafer ST, Gage FH, Kagalwala MN.

J Neurosci. 2015 Nov 4;35(44):14872-84. doi: 10.1523/JNEUROSCI.4286-14.2015.

PMID: 26538656


Pan FC, Brissova M, Powers AC, Pfaff S, Wright CV.

Development. 2015 Nov 1;142(21):3637-48. doi: 10.1242/dev.126011.

PMID: 26534984


Mertens J, Wang QW, Kim Y, Yu DX, Pham S, Yang B, Zheng Y, Diffenderfer KE, Zhang J, Soltani S, Eames T, Schafer ST, Boyer L, Marchetto MC, Nurnberger JI, Calabrese JR, Ødegaard KJ, McCarthy MJ, Zandi PP, Alda M, Nievergelt CM; Pharmacogenomics of Bipolar Disorder Study, Mi S, Brennand KJ, Kelsoe JR, Gage FH, Yao J.

Nature. 2015 Nov 5;527(7576):95-9. doi: 10.1038/nature15526. Epub 2015 Oct 28. Erratum in:  Nature. 2016 Feb 11;530(7589):242. Alba, Martin [Corrected to Alda, Martin] . PMID: 26524527


Bourane S, Duan B, Koch SC, Dalet A, Britz O, Garcia-Campmany L, Kim E, Cheng L, Ghosh A, Ma Q, Goulding M.

Science. 2015 Oct 30;350(6260):550-4. doi: 10.1126/science.aac8653.

PMID: 26516282


Vadodaria KC, Mertens J, Paquola A, Bardy C, Li X, Jappelli R, Fung L, Marchetto MC, Hamm M, Gorris M, Koch P, Gage FH.

Mol Psychiatry. 2016 Jan;21(1):49-61. doi: 10.1038/mp.2015.161. Epub 2015 Oct 27.

PMID: 26503761


He W, Bai G, Zhou H, Wei N, White NM, Lauer J, Liu H, Shi Y, Dumitru CD, Lettieri K, Shubayev V, Jordanova A, Guergueltcheva V, Griffin PR, Burgess RW, Pfaff SL, Yang XL.

Nature. 2015 Oct 29;526(7575):710-4. doi: 10.1038/nature15510. Epub 2015 Oct 21. Erratum in:  Nature. 2016 Apr 21;532(7599):402

PMID: 26503042


Bartol TM, Keller DX, Kinney JP, Bajaj CL, Harris KM, Sejnowski TJ, Kennedy MB.

Front Synaptic Neurosci. 2015 Oct 7;7:17. doi: 10.3389/fnsyn.2015.00017. eCollection 2015.

PMID: 26500546


Denli AM, Narvaiza I, Kerman BE, Pena M, Benner C, Marchetto MC, Diedrich JK, Aslanian A, Ma J, Moresco JJ, Moore L, Hunter T, Saghatelian A, Gage FH.

Cell. 2015 Oct 22;163(3):583-93. doi: 10.1016/j.cell.2015.09.025. Epub 2015 Oct 22.

PMID: 26496605


Veltz R, Sejnowski TJ.

Neural Comput. 2015 Dec;27(12):2477-509. doi: 10.1162/NECO_a_00786. Epub 2015 Oct 23.

PMID: 26496044


Mu Y, Zhao C, Toni N, Yao J, Gage FH.

Elife. 2015 Oct 16;4:e07871. doi: 10.7554/eLife.07871.

PMID: 26473971


Britz O, Zhang J, Grossmann KS, Dyck J, Kim JC, Dymecki S, Gosgnach S, Goulding M.

Elife. 2015 Oct 14;4. doi: 10.7554/eLife.04718. Erratum in:  Elife. 2015;4:e13038

PMID: 26465208


Wang X, Pinto-Duarte A, Behrens MM, Zhou X, Sejnowski TJ.

Sci Rep. 2015 Oct 13;5:14964. doi: 10.1038/srep14964.

PMID: 26459883


Mertens J, Paquola ACM, Ku M, Hatch E, Böhnke L, Ladjevardi S, McGrath S, Campbell B, Lee H, Herdy JR, Gonçalves JT, Toda T, Kim Y, Winkler J, Yao J, Hetzer MW, Gage FH.

Cell Stem Cell. 2015 Dec 3;17(6):705-718. doi: 10.1016/j.stem.2015.09.001. Epub 2015 Oct 8.

PMID: 26456686


González OC, Krishnan GP, Chauvette S, Timofeev I, Sejnowski T, Bazhenov M.

J Neurosci. 2015 Sep 30;35(39):13448-62. doi: 10.1523/JNEUROSCI.5038-14.2015.

PMID: 26424890


Prescott SL, Srinivasan R, Marchetto MC, Grishina I, Narvaiza I, Selleri L, Gage FH, Swigut T, Wysocka J.

Cell. 2015 Sep 24;163(1):68-83. doi: 10.1016/j.cell.2015.08.036. Epub 2015 Sep 10.

PMID: 26365491


Hinckley CA, Alaynick WA, Gallarda BW, Hayashi M, Hilde KL, Driscoll SP, Dekker JD, Tucker HO, Sharpee TO, Pfaff SL.

Neuron. 2015 Sep 2;87(5):1008-21. doi: 10.1016/j.neuron.2015.08.005.

PMID: 26335645


Kempermann G, Song H, Gage FH.

Cold Spring Harb Perspect Biol. 2015 Sep 1;7(9):a018812. doi: 10.1101/cshperspect.a018812. Review.

PMID: 26330519


Jovičić A, Mertens J, Boeynaems S, Bogaert E, Chai N, Yamada SB, Paul JW 3rd, Sun S, Herdy JR, Bieri G, Kramer NJ, Gage FH, Van Den Bosch L, Robberecht W, Gitler AD.

Nat Neurosci. 2015 Sep;18(9):1226-9. doi: 10.1038/nn.4085.

PMID: 26308983


Firth AL, Menon T, Parker GS, Qualls SJ, Lewis BM, Ke E, Dargitz CT, Wright R, Khanna A, Gage FH, Verma IM.

Cell Rep. 2015 Sep 1;12(9):1385-90. doi: 10.1016/j.celrep.2015.07.062. Epub 2015 Aug 20.

PMID: 26299960


Jadi MP, Behrens MM, Sejnowski TJ.

Biol Psychiatry. 2016 May 1;79(9):716-726. doi: 10.1016/j.biopsych.2015.07.005. Epub 2015 Jul 17. Review.

PMID: 26281716


Barnes SA, Pinto-Duarte A, Kappe A, Zembrzycki A, Metzler A, Mukamel EA, Lucero J, Wang X, Sejnowski TJ, Markou A, Behrens MM.

Mol Psychiatry. 2015 Oct;20(10):1161-72. doi: 10.1038/mp.2015.113. Epub 2015 Aug 11.

PMID: 26260494


Wang J, Telese F, Tan Y, Li W, Jin C, He X, Basnet H, Ma Q, Merkurjev D, Zhu X, Liu Z, Zhang J, Ohgi K, Taylor H, White RR, Tazearslan C, Suh Y, Macfarlan TS, Pfaff SL, Rosenfeld MG.

Nat Neurosci. 2015 Sep;18(9):1256-64. doi: 10.1038/nn.4069. Epub 2015 Jul 27.

PMID: 26214369


Huh D, Sejnowski TJ.

Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):E3950-8. doi: 10.1073/pnas.1510208112. Epub 2015 Jul 6.

PMID: 26150514


Pawar K, Cummings BJ, Thomas A, Shea LD, Levine A, Pfaff S, Anderson AJ.

Biomaterials. 2015 Oct;65:1-12. doi: 10.1016/j.biomaterials.2015.05.032. Epub 2015 Jun 23. PMID: 26134079


Han J, Sarkar A, Gage FH.

Nat Neurosci. 2015 Jul;18(7):931-3. doi: 10.1038/nn.4045. No abstract available. 

PMID: 26108719


Hatch EM, Hetzer MW.

Cell. 2015 Jun 18;161(7):1502-4. doi: 10.1016/j.cell.2015.06.005.

PMID: 26091034


Mo A, Mukamel EA, Davis FP, Luo C, Henry GL, Picard S, Urich MA, Nery JR, Sejnowski TJ, Lister R, Eddy SR, Ecker JR, Nathans J.

Neuron. 2015 Jun 17;86(6):1369-84. doi: 10.1016/j.neuron.2015.05.018.

PMID: 26087164


Callaway EM, Luo L.

J Neurosci. 2015 Jun 17;35(24):8979-85. doi: 10.1523/JNEUROSCI.0409-15.2015. Review. No abstract available. 

PMID: 26085623


Jacinto FV, Benner C, Hetzer MW.

Genes Dev. 2015 Jun 15;29(12):1224-38. doi: 10.1101/gad.260919.115. Epub 2015 Jun 16.

PMID: 26080816


Juavinett AL, Callaway EM.

Curr Biol. 2015 Jun 29;25(13):1759-64. doi: 10.1016/j.cub.2015.05.028. Epub 2015 Jun 11.

PMID: 26073133


Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel EA, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, Ren B, Sejnowski TJ, Wang W, Ecker JR.

Nature. 2015 Jul 9;523(7559):212-6. doi: 10.1038/nature14465. Epub 2015 Jun 1. Erratum in:  Nature. 2016 Feb 11;530(7589):242

PMID: 26030523


Kerman BE, Kim HJ, Padmanabhan K, Mei A, Georges S, Joens MS, Fitzpatrick JA, Jappelli R, Chandross KJ, August P, Gage FH.

Development. 2015 Jun 15;142(12):2213-25. doi: 10.1242/dev.116517. Epub 2015 May 26.

PMID: 26015546


Hatch EM, Hetzer MW.

Curr Biol. 2015 May 18;25(10):R397-9. doi: 10.1016/j.cub.2015.02.033. No abstract available. 

PMID: 25989073


Lainscsek C, Weyhenmeyer J, Sejnowski TJ, Letellier C.

Chaos Solitons Fractals. 2015 Jul;76:182-189.

PMID: 25983399


Sejnowski TJ.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):6523-4. doi: 10.1073/pnas.1506644112. Epub 2015 May 12. No abstract available. 

PMID: 25969510


Izpisua Belmonte JC, Callaway EM, Caddick SJ, Churchland P, Feng G, Homanics GE, Lee KF, Leopold DA, Miller CT, Mitchell JF, Mitalipov S, Moutri AR, Movshon JA, Okano H, Reynolds JH, Ringach D, Sejnowski TJ, Silva AC, Strick PL, Wu J, Zhang F.

Neuron. 2015 May 6;86(3):617-31. doi: 10.1016/j.neuron.2015.03.021. Review. Erratum in: Neuron. 2015 Aug 5;87(3):671. 

PMID: 25950631


Sejnowski TJ.

Cold Spring Harb Symp Quant Biol. 2014;79:237-41. doi: 10.1101/sqb.2014.79.024885. Epub 2015 May 6. Review.

PMID: 25948639


Bardy C, van den Hurk M, Eames T, Marchand C, Hernandez RV, Kellogg M, Gorris M, Galet B, Palomares V, Brown J, Bang AG, Mertens J, Böhnke L, Boyer L, Simon S, Gage FH.

Proc Natl Acad Sci U S A. 2015 May 19;112(20):E2725-34. doi: 10.1073/pnas.1504393112. Epub 2015 Apr 13. Erratum in:  Proc Natl Acad Sci U S A. 2015 Jun 23;112(25):E3312 . PMID: 25870293


Calhoun AJ, Tong A, Pokala N, Fitzpatrick JA, Sharpee TO, Chalasani SH.

Neuron. 2015 Apr 22;86(2):428-41. doi: 10.1016/j.neuron.2015.03.026. Epub 2015 Apr 9.

PMID: 25864633


Pei L, Mu Y, Leblanc M, Alaynick W, Barish GD, Pankratz M, Tseng TW, Kaufman S, Liddle C, Yu RT, Downes M, Pfaff SL, Auwerx J, Gage FH, Evans RM.

Cell Metab. 2015 Apr 7;21(4):628-36. doi: 10.1016/j.cmet.2015.03.004.

PMID: 25863252


Lee H, Kim M, Kim N, Macfarlan T, Pfaff SL, Mastick GS, Song MR.

Exp Neurol. 2015 Jul;269:17-27. doi: 10.1016/j.expneurol.2015.03.024. Epub 2015 Apr 3.

PMID: 25843547


Adamowicz DH, Mertens J, Gage FH.

Biol Psychiatry. 2015 Apr 15;77(8):680-2. doi: 10.1016/j.biopsych.2015.02.021. No abstract available. 

PMID: 25835286


Amador-Arjona A, Cimadamore F, Huang CT, Wright R, Lewis S, Gage FH, Terskikh AV.

Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):E1936-45. doi: 10.1073/pnas.1421480112. Epub 2015 Mar 30.

PMID: 25825708


Jorgenson LA, Newsome WT, Anderson DJ, Bargmann CI, Brown EN, Deisseroth K, Donoghue JP, Hudson KL, Ling GS, MacLeish PR, Marder E, Normann RA, Sanes JR, Schnitzer MJ, Sejnowski TJ, Tank DW, Tsien RY, Ugurbil K, Wingfield JC.

Philos Trans R Soc Lond B Biol Sci. 2015 May 19;370(1668). pii: 20140164. doi: 10.1098/rstb.2014.0164. Review.

PMID: 25823863


Schafer ST, Han J, Pena M, von Bohlen Und Halbach O, Peters J, Gage FH.

J Neurosci. 2015 Mar 25;35(12):4983-98. doi: 10.1523/JNEUROSCI.4130-14.2015.

PMID: 25810528


Deng W, Gage FH.

Front Syst Neurosci. 2015 Mar 6;9:34. doi: 10.3389/fnsys.2015.00034. eCollection 2015.

PMID: 25798094


Li PH, Gauthier JL, Schiff M, Sher A, Ahn D, Field GD, Greschner M, Callaway EM, Litke AM, Chichilnisky EJ.

J Neurosci. 2015 Mar 18;35(11):4663-75. doi: 10.1523/JNEUROSCI.3675-14.2015.

PMID: 25788683


Gomez-Cavazos JS, Hetzer MW.

J Cell Biol. 2015 Mar 16;208(6):671-81. doi: 10.1083/jcb.201410047.

PMID: 25778917


Hasenstaub A, Otte S, Callaway E.

Cereb Cortex. 2016 Feb;26(2):797-806. doi: 10.1093/cercor/bhv044. Epub 2015 Mar 16.

PMID: 25778344


Aljadeff J, Stern M, Sharpee T.

Phys Rev Lett. 2015 Feb 27;114(8):088101. Epub 2015 Feb 23.

PMID: 25768781


Ibarra A, Hetzer MW.

Genes Dev. 2015 Feb 15;29(4):337-49. doi: 10.1101/gad.256495.114. Review.

PMID: 25691464


Moldakarimov S, Bazhenov M, Sejnowski TJ.

Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):2545-50. doi: 10.1073/pnas.1500643112. Epub 2015 Feb 9.

PMID: 25675531


Kastner DB, Baccus SA, Sharpee TO.

Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):2533-8. doi: 10.1073/pnas.1418092112. Epub 2015 Feb 9.

PMID: 25675497


Nimmerjahn A, Bergles DE.

Curr Opin Neurobiol. 2015 Jun;32:95-106. doi: 10.1016/j.conb.2015.01.015. Epub 2015 Feb 6. Review.

PMID: 25665733


Bourane S, Grossmann KS, Britz O, Dalet A, Del Barrio MG, Stam FJ, Garcia-Campmany L, Koch S, Goulding M.

Cell. 2015 Jan 29;160(3):503-15. doi: 10.1016/j.cell.2015.01.011.

PMID: 25635458


Lainscsek C, Sejnowski TJ.

Neural Comput. 2015 Mar;27(3):594-614. doi: 10.1162/NECO_a_00706. Epub 2015 Jan 20.

PMID: 25602777