{"id":5392,"date":"2015-10-25T17:44:05","date_gmt":"2015-10-26T00:44:05","guid":{"rendered":"https:\/\/vermont.salk.edu\/?page_id=5392"},"modified":"2024-01-30T21:15:17","modified_gmt":"2024-01-31T05:15:17","slug":"resources","status":"publish","type":"page","link":"https:\/\/www.salk.edu\/es\/science\/core-facilities\/integrative-genomics-and-bioinformatics-core\/resources\/","title":{"rendered":"Recursos"},"content":{"rendered":"<h5>Tutoriales<\/h5>\n<p>Por favor, consulta la wiki de IGC para obtener informaci\u00f3n adicional sobre el an\u00e1lisis central y gen\u00f3mico. Nuestro sitio web del taller de 2017 tiene diapositivas e informaci\u00f3n adicional sobre an\u00e1lisis gen\u00f3micos b\u00e1sicos, y tambi\u00e9n te animamos a consultar estos valiosos recursos sobre secuenciaci\u00f3n de pr\u00f3xima generaci\u00f3n y an\u00e1lisis gen\u00f3micos:<\/p>\n<ul class=\"indent\">\n<li><a href=\"http:\/\/homer.ucsd.edu\/homer\/basicTutorial\/index.html\" target=\"_blank\" rel=\"noopener\">Tutorial de secuenciaci\u00f3n de pr\u00f3xima generaci\u00f3n HOMER<\/a><\/li>\n<li><a href=\"https:\/\/files.fosswire.com\/2007\/08\/fwunixref.pdf\" target=\"_blank\" rel=\"noopener\">Referencia de comandos de Linux<\/a><\/li>\n<li><a href=\"https:\/\/doi.org\/10.1186\/s13059-016-0881-8\" target=\"_blank\" rel=\"noopener\">Mejores pr\u00e1cticas de RNA-Seq<\/a><\/li>\n<li><a href=\"http:\/\/igc2.salk.edu\/class\/HowManyBiologicalReplicates.pdf\" target=\"_blank\" rel=\"noopener\">Importancia de los r\u00e9plicados biol\u00f3gicos<\/a><\/li>\n<li><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3904521\/\" target=\"_blank\" rel=\"noopener\">R\u00e9plicas vs. Profundidad de secuenciaci\u00f3n<\/a><\/li>\n<li><a href=\"https:\/\/doi.org\/10.1186\/s12859-015-0794-7\" target=\"_blank\" rel=\"noopener\">Comparaci\u00f3n de herramientas populares de expresi\u00f3n diferencial<\/a><\/li>\n<li><a href=\"http:\/\/igc2.salk.edu\/class\/bbw016.pdf\" target=\"_blank\" rel=\"noopener\">\u00bfCu\u00e1les son las herramientas disponibles para el an\u00e1lisis de expresi\u00f3n a nivel de isoforma?<\/a><\/li>\n<li><a href=\"http:\/\/igc2.salk.edu\/class\/DesignAndAnalysisOfChIP-SeqExperiments.pdf\" target=\"_blank\" rel=\"noopener\">Dise\u00f1o y An\u00e1lisis de ChIP-Seq: Descripci\u00f3n General<\/a><\/li>\n<li><a href=\"http:\/\/igc2.salk.edu\/class\/HiCPaper.pdf\" target=\"_blank\" rel=\"noopener\">Art\u00edculo original de HiC de Lieberman-Aiden et al. (2009)<\/a><\/li>\n<li><a href=\"https:\/\/www.4dnucleome.org\/software.html\" target=\"_blank\" rel=\"noopener\">Herramientas del Proyecto 4D Nucleome<\/a><\/li>\n<\/ul>\n<h5>Herramientas de An\u00e1lisis<\/h5>\n<p>Existen muchas herramientas para ayudarte a analizar datos. Tenemos muchas herramientas de l\u00ednea de comandos instaladas en nuestros servidores compartidos y hay muchas herramientas en l\u00ednea disponibles, as\u00ed que cont\u00e1ctanos si tienes preguntas espec\u00edficas. Aqu\u00ed te presentamos algunas de nuestras favoritas:<\/p>\n<ul class=\"indent\">\n<li><a href=\"https:\/\/genome.ucsc.edu\/\" target=\"_blank\" rel=\"noopener\">Navegador del Genoma UCSC<\/a> es una potente herramienta de visualizaci\u00f3n en l\u00ednea para todos tus conjuntos de datos gen\u00f3micos lineales.<\/li>\n<li><a href=\"http:\/\/software.broadinstitute.org\/gsea\/index.jsp\" target=\"_blank\" rel=\"noopener\">GSEA:<\/a> El An\u00e1lisis de Enriquecimiento de Conjuntos de Genes se utiliza para encontrar firmas de enriquecimiento de conjuntos de genes en tus conjuntos de datos de genes.<\/li>\n<li><a href=\"http:\/\/www.webgestalt.org\/\" target=\"_blank\" rel=\"noopener\">WebGestalt:<\/a> La herramienta de an\u00e1lisis de conjuntos de genes basada en la web tambi\u00e9n se utiliza para verificar si hay v\u00edas o t\u00e9rminos GO enriquecidos en sus listas de genes.<\/li>\n<li><a href=\"http:\/\/rick.salk.edu\" target=\"_blank\" rel=\"noopener\">Rick:<\/a> Kit interactivo de computaci\u00f3n RNA para an\u00e1lisis automatizado de RNA-Seq a partir de una tabla de recuentos brutos.<\/li>\n<li><a href=\"http:\/\/bart.salk.edu\" target=\"_blank\" rel=\"noopener\">BART:<\/a> Herramienta de Investigaci\u00f3n de Arreglos Bioinform\u00e1ticos para an\u00e1lisis automatizado de microarreglos.<\/li>\n<\/ul>\n<h5>Secuenciaci\u00f3n<\/h5>\n<p>IGC no es un n\u00facleo de secuenciaci\u00f3n. El enfoque actual de IGC es el an\u00e1lisis de datos gen\u00f3micos. El n\u00facleo NGS es responsable de la generaci\u00f3n de datos de secuenciaci\u00f3n de pr\u00f3xima generaci\u00f3n, incluida la preparaci\u00f3n de librer\u00edas, la cuantificaci\u00f3n y la secuenciaci\u00f3n propiamente dicha.<a href=\"http:\/\/ngs.salk.edu\/\">http:\/\/ngs.salk.edu\/<\/a>. Sin embargo, IGC puede ayudar a asesorar a los grupos sobre sus opciones y coordinar los esfuerzos de secuenciaci\u00f3n entre m\u00faltiples grupos para ayudar a minimizar los costos.<\/p>\n<p>IGC puede ofrecer asesoramiento sobre el dise\u00f1o experimental, incluida la selecci\u00f3n de los ensayos gen\u00f3micos apropiados, los protocolos de preparaci\u00f3n de bibliotecas y las estrategias de secuenciaci\u00f3n. Si su grupo es nuevo en la secuenciaci\u00f3n, es una buena idea hablar sobre sus planes con anticipaci\u00f3n para comprender qu\u00e9 opciones est\u00e1n disponibles y asegurarse de que sus planes de secuenciaci\u00f3n coincidan con el tipo de an\u00e1lisis de datos que espera realizar despu\u00e9s de recibir sus datos.<\/p>\n<h5>Ayuda de TI<\/h5>\n<p>El IGC trabaja de cerca con el NGS core y el departamento de TI de Salk para asegurar que todos los recursos computacionales y datos se mantengan adecuadamente. Si perdi\u00f3 el enlace de sus datos de secuenciaci\u00f3n, o necesita verificar detalles de secuenciaci\u00f3n, por favor contacte al NGS core. Si tiene problemas para ejecutar an\u00e1lisis bioinform\u00e1ticos o tiene inconvenientes con herramientas relacionadas con la bioinform\u00e1tica, por favor contacte al IGC. Si tiene problemas para acceder a un servidor, necesita ayuda con la VPN de Salk, o tiene problemas generales con su computadora, correo electr\u00f3nico o tel\u00e9fonos, por favor contacte a TI de Salk.<\/p>","protected":false},"excerpt":{"rendered":"<h5>Tutoriales<\/h5>\n<p>Por favor, consulta la wiki de IGC para obtener informaci\u00f3n adicional sobre el an\u00e1lisis central y gen\u00f3mico. Nuestro sitio web del taller de 2017 tiene diapositivas e informaci\u00f3n adicional sobre an\u00e1lisis gen\u00f3micos b\u00e1sicos, y tambi\u00e9n te animamos a consultar estos valiosos recursos sobre secuenciaci\u00f3n de pr\u00f3xima generaci\u00f3n y an\u00e1lisis gen\u00f3micos:<\/p>","protected":false},"author":3,"featured_media":0,"parent":526,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-core-facilities-resources.php","meta":{"_acf_changed":false,"footnotes":""},"folder":[542],"class_list":["post-5392","page","type-page","status-publish","hentry"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.6 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Resources - Salk Institute for Biological Studies<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.salk.edu\/es\/science\/core-facilities\/integrative-genomics-and-bioinformatics-core\/resources\/\" \/>\n<meta property=\"og:locale\" content=\"es_MX\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Resources - Salk Institute for Biological Studies\" \/>\n<meta property=\"og:description\" content=\"Tutorials Please check out the IGC wiki for additional information on the core and genomics analysis. Our 2017 workshop website has additional slides and information on basic genomics analyses, and we also encourage you to check out these valuable resources on next-gen sequencing and genomics analysis:\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.salk.edu\/es\/science\/core-facilities\/integrative-genomics-and-bioinformatics-core\/resources\/\" \/>\n<meta property=\"og:site_name\" content=\"Salk Institute for Biological Studies\" \/>\n<meta property=\"article:modified_time\" content=\"2024-01-31T05:15:17+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.salk.edu\/wp-content\/uploads\/2023\/03\/salk-institute-preview-image.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"628\" \/>\n\t<meta property=\"og:image:height\" content=\"329\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"2 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/www.salk.edu\\\/science\\\/core-facilities\\\/integrative-genomics-and-bioinformatics-core\\\/resources\\\/\",\"url\":\"https:\\\/\\\/www.salk.edu\\\/science\\\/core-facilities\\\/integrative-genomics-and-bioinformatics-core\\\/resources\\\/\",\"name\":\"Resources - Salk Institute for Biological Studies\",\"isPartOf\":{\"@id\":\"https:\\\/\\\/www.salk.edu\\\/#website\"},\"datePublished\":\"2015-10-26T00:44:05+00:00\",\"dateModified\":\"2024-01-31T05:15:17+00:00\",\"breadcrumb\":{\"@id\":\"https:\\\/\\\/www.salk.edu\\\/science\\\/core-facilities\\\/integrative-genomics-and-bioinformatics-core\\\/resources\\\/#breadcrumb\"},\"inLanguage\":\"es-MX\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\\\/\\\/www.salk.edu\\\/science\\\/core-facilities\\\/integrative-genomics-and-bioinformatics-core\\\/resources\\\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\\\/\\\/www.salk.edu\\\/science\\\/core-facilities\\\/integrative-genomics-and-bioinformatics-core\\\/resources\\\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\\\/\\\/www.salk.edu\\\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Science\",\"item\":\"https:\\\/\\\/www.salk.edu\\\/science\\\/\"},{\"@type\":\"ListItem\",\"position\":3,\"name\":\"Core Facilities\",\"item\":\"https:\\\/\\\/www.salk.edu\\\/science\\\/core-facilities\\\/\"},{\"@type\":\"ListItem\",\"position\":4,\"name\":\"The Razavi Newman Integrative Genomics and Bioinformatics Core\",\"item\":\"https:\\\/\\\/www.salk.edu\\\/science\\\/core-facilities\\\/integrative-genomics-and-bioinformatics-core\\\/\"},{\"@type\":\"ListItem\",\"position\":5,\"name\":\"Resources\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\\\/\\\/www.salk.edu\\\/#website\",\"url\":\"https:\\\/\\\/www.salk.edu\\\/\",\"name\":\"Salk Institute for Biological Studies\",\"description\":\"The Power of Science\",\"publisher\":{\"@id\":\"https:\\\/\\\/www.salk.edu\\\/#organization\"},\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\\\/\\\/www.salk.edu\\\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"es-MX\"},{\"@type\":\"Organization\",\"@id\":\"https:\\\/\\\/www.salk.edu\\\/#organization\",\"name\":\"Salk Institute for Biological Studies\",\"url\":\"https:\\\/\\\/www.salk.edu\\\/\",\"logo\":{\"@type\":\"ImageObject\",\"inLanguage\":\"es-MX\",\"@id\":\"https:\\\/\\\/www.salk.edu\\\/#\\\/schema\\\/logo\\\/image\\\/\",\"url\":\"http:\\\/\\\/www.salk.edu\\\/wp-content\\\/uploads\\\/2023\\\/03\\\/salk_logo_696.jpg\",\"contentUrl\":\"http:\\\/\\\/www.salk.edu\\\/wp-content\\\/uploads\\\/2023\\\/03\\\/salk_logo_696.jpg\",\"width\":696,\"height\":696,\"caption\":\"Salk Institute for Biological Studies\"},\"image\":{\"@id\":\"https:\\\/\\\/www.salk.edu\\\/#\\\/schema\\\/logo\\\/image\\\/\"}}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Resources - Salk Institute for Biological Studies","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/www.salk.edu\/es\/science\/core-facilities\/integrative-genomics-and-bioinformatics-core\/resources\/","og_locale":"es_MX","og_type":"article","og_title":"Resources - Salk Institute for Biological Studies","og_description":"Tutorials Please check out the IGC wiki for additional information on the core and genomics analysis. 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Services<\/a><\/li>\n<li class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-52737\"><a href=\"https:\/\/www.salk.edu\/es\/science\/core-facilities\/integrative-genomics-and-bioinformatics-core\/rates\/\">Scheduling &#038; Rates<\/a><\/li>\n<li class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-5396\"><a href=\"https:\/\/www.salk.edu\/es\/science\/core-facilities\/integrative-genomics-and-bioinformatics-core\/contact\/\">Contact<\/a><\/li>\n<\/ul><\/div>","salk_custom_body_class":"","poster_quote":""},"_links":{"self":[{"href":"https:\/\/www.salk.edu\/es\/wp-json\/wp\/v2\/pages\/5392","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.salk.edu\/es\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.salk.edu\/es\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.salk.edu\/es\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/www.salk.edu\/es\/wp-json\/wp\/v2\/comments?post=5392"}],"version-history":[{"count":12,"href":"https:\/\/www.salk.edu\/es\/wp-json\/wp\/v2\/pages\/5392\/revisions"}],"predecessor-version":[{"id":17705,"href":"https:\/\/www.salk.edu\/es\/wp-json\/wp\/v2\/pages\/5392\/revisions\/17705"}],"up":[{"embeddable":true,"href":"https:\/\/www.salk.edu\/es\/wp-json\/wp\/v2\/pages\/526"}],"wp:attachment":[{"href":"https:\/\/www.salk.edu\/es\/wp-json\/wp\/v2\/media?parent=5392"}],"wp:term":[{"taxonomy":"folder","embeddable":true,"href":"https:\/\/www.salk.edu\/es\/wp-json\/wp\/v2\/folder?post=5392"}],"curies":[{"name":"la hora de","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}