{"id":41400,"date":"2023-06-28T10:25:14","date_gmt":"2023-06-28T17:25:14","guid":{"rendered":"https:\/\/vermont.salk.edu\/?page_id=41400"},"modified":"2024-08-23T15:40:50","modified_gmt":"2024-08-23T22:40:50","slug":"r-programming-in-rstudio-and-single-cell-analysis-workshop","status":"publish","type":"page","link":"https:\/\/www.salk.edu\/es\/science\/core-facilities\/integrative-genomics-and-bioinformatics-core\/r-programming-in-rstudio-and-single-cell-analysis-workshop\/","title":{"rendered":"R programming in RStudio and Single-cell analysis Workshop"},"content":{"rendered":"<p>The Integrative Genomics and Bioinformatics Core at the Salk Institute is pleased to offer the workshop, <strong>R programming in RStudio and Single-cell analysis<\/strong>, for scholars seeking to expand and strengthen bioinformatic analysis techniques. In addition to introducing participants to the bioinformatics and next gen sequencing cores, the workshop is designed to teach scientists the concepts behind R programming and its role in single-cell analysis and provide computational resources to test and run their own analyses.<\/p>\n<p>The workshop will be held virtually on <strong>Friday, September 25, 2024<\/strong>.<\/p>\n<h2>Agenda<\/h2>\n<p><strong>Introduction to Cores\/Sequencing &#8211;<\/strong> 12:00 \u2013 1:00 pm PT<br \/>\n<strong>Introduction to R programming in RStudio<\/strong> &#8211; 1:00 \u2013 3:00 pm PT<br \/>\n<strong>Single-cell analysis with R<\/strong> &#8211; 3:00 \u2013 5:00 pm PT<\/p>\n<h2>Interest Form<\/h2>\n<p>Due to limited capacity, we ask that all individuals submit their interest to participate in the workshop via the following form. <strong>Participants will be selected on a rolling basis<\/strong> and will be contacted via email with workshop participation and login details. For questions, please contact <a href=\"mailto:nschenkerahmed@salk.edu\">nschenkerahmed@salk.edu<\/a>.<\/p>\n<p><em>We highly encourage submissions from scholars who are <a href=\"https:\/\/diversity.nih.gov\/about-us\/population-underrepresented\" target=\"_blank\" rel=\"noopener\">underrepresented in biomedical research<\/a>.<\/em><\/p>\n<div class=\"page-form\"><script type=\"text\/javascript\">\n\/* <![CDATA[ *\/\nvar gform;gform||(document.addEventListener(\"gform_main_scripts_loaded\",function(){gform.scriptsLoaded=!0}),document.addEventListener(\"gform\/theme\/scripts_loaded\",function(){gform.themeScriptsLoaded=!0}),window.addEventListener(\"DOMContentLoaded\",function(){gform.domLoaded=!0}),gform={domLoaded:!1,scriptsLoaded:!1,themeScriptsLoaded:!1,isFormEditor:()=>\"function\"==typeof InitializeEditor,callIfLoaded:function(o){return!(!gform.domLoaded||!gform.scriptsLoaded||!gform.themeScriptsLoaded&&!gform.isFormEditor()||(gform.isFormEditor()&&console.warn(\"The use of 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d=gform.hooks[o][r];null==n&&(n=r+\"_\"+d.length),gform.hooks[o][r].push({tag:n,callable:e,priority:t=null==t?10:t})},doHook:function(r,o,e){var t;if(e=Array.prototype.slice.call(e,1),null!=gform.hooks[r][o]&&((o=gform.hooks[r][o]).sort(function(o,r){return o.priority-r.priority}),o.forEach(function(o){\"function\"!=typeof(t=o.callable)&&(t=window[t]),\"action\"==r?t.apply(null,e):e[0]=t.apply(null,e)})),\"filter\"==r)return e[0]},removeHook:function(o,r,t,n){var e;null!=gform.hooks[o][r]&&(e=(e=gform.hooks[o][r]).filter(function(o,r,e){return!!(null!=n&&n!=o.tag||null!=t&&t!=o.priority)}),gform.hooks[o][r]=e)}});\n\/* ]]> *\/\n<\/script>\n\n                <div class='gf_browser_gecko gform_wrapper gravity-theme gform-theme--no-framework' data-form-theme='gravity-theme' data-form-index='0' id='gform_wrapper_183' ><div id='gf_183' class='gform_anchor' tabindex='-1'><\/div><form method='post' enctype='multipart\/form-data' target='gform_ajax_frame_183' id='gform_183'  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field_validation_below gfield_visibility_visible\"  ><legend class='gfield_label gform-field-label gfield_label_before_complex' >Name<span class=\"gfield_required\"><span class=\"gfield_required gfield_required_text\">(Required)<\/span><\/span><\/legend><div class='ginput_complex ginput_container ginput_container--name no_prefix has_first_name no_middle_name has_last_name no_suffix gf_name_has_2 ginput_container_name gform-grid-row' id='input_183_1'>\n                            \n                            <span id='input_183_1_3_container' class='name_first gform-grid-col gform-grid-col--size-auto' >\n                                                    <input type='text' name='input_1.3' id='input_183_1_3' value=''   aria-required='true'     \/>\n                                                    <label for='input_183_1_3' class='gform-field-label gform-field-label--type-sub '>First<\/label>\n                                                <\/span>\n                            \n                            <span id='input_183_1_6_container' class='name_last gform-grid-col gform-grid-col--size-auto' >\n                                                    <input type='text' name='input_1.6' id='input_183_1_6' value=''   aria-required='true'     \/>\n                                                    <label for='input_183_1_6' class='gform-field-label gform-field-label--type-sub '>Last<\/label>\n                                                <\/span>\n                            \n                        <\/div><\/fieldset><div id=\"field_183_13\" class=\"gfield gfield--type-html gfield--input-type-html gfield--width-full gfield_html gfield_html_formatted gfield_no_follows_desc field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><p>&nbsp;<\/p><\/div><div id=\"field_183_3\" class=\"gfield gfield--type-text gfield--input-type-text gfield_contains_required field_sublabel_below gfield--no-description 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class=\"gfield_required\"><span class=\"gfield_required gfield_required_text\">(Required)<\/span><\/span><\/label><div class='ginput_container ginput_container_email'>\n                            <input name='input_5' id='input_183_5' type='email' value='' class='large'    aria-required=\"true\" aria-invalid=\"false\"  \/>\n                        <\/div><\/div><div id=\"field_183_18\" class=\"gfield gfield--type-html gfield--input-type-html gfield--width-full gfield_html gfield_html_formatted gfield_no_follows_desc field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><p>&nbsp;<\/p><\/div><div id=\"field_183_6\" class=\"gfield gfield--type-textarea gfield--input-type-textarea gfield--width-full gfield_contains_required field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><label class='gfield_label gform-field-label' for='input_183_6'>Input a 200-word statement of interest describing your research and how this workshop aligns with your interests.<span class=\"gfield_required\"><span class=\"gfield_required gfield_required_text\">(Required)<\/span><\/span><\/label><div class='ginput_container ginput_container_textarea'><textarea name='input_6' id='input_183_6' class='textarea large'     aria-required=\"true\" aria-invalid=\"false\"   rows='10' cols='50'><\/textarea><\/div><\/div><div id=\"field_183_21\" class=\"gfield gfield--type-html gfield--input-type-html gfield--width-full gfield_html gfield_html_formatted gfield_no_follows_desc field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  >The National Institute of Health (NIH) funds this workshop through an approved Plan for Enhancing Diverse Perspective (PEDP). The following demographic questions help us assess and report on the efficacy of our diversity, equity, and inclusion outreach efforts.<\/div><div id=\"field_183_17\" class=\"gfield gfield--type-html gfield--input-type-html gfield--width-full gfield_html gfield_html_formatted gfield_no_follows_desc field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><p>&nbsp;<\/p><\/div><fieldset id=\"field_183_7\" class=\"gfield gfield--type-radio gfield--type-choice gfield--input-type-radio gfield_contains_required field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><legend class='gfield_label gform-field-label' >With which race do you identify?<span class=\"gfield_required\"><span class=\"gfield_required gfield_required_text\">(Required)<\/span><\/span><\/legend><div class='ginput_container ginput_container_radio'><div class='gfield_radio' id='input_183_7'>\n\t\t\t<div class='gchoice gchoice_183_7_0'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_7' type='radio' value='White'  id='choice_183_7_0' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_7_0' id='label_183_7_0' class='gform-field-label gform-field-label--type-inline'>White<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_7_1'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_7' type='radio' value='Middle Eastern\/North African'  id='choice_183_7_1' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_7_1' id='label_183_7_1' class='gform-field-label gform-field-label--type-inline'>Middle Eastern\/North African<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_7_2'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_7' type='radio' value='Black\/African American'  id='choice_183_7_2' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_7_2' id='label_183_7_2' class='gform-field-label gform-field-label--type-inline'>Black\/African American<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_7_3'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_7' type='radio' value='Asian'  id='choice_183_7_3' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_7_3' id='label_183_7_3' class='gform-field-label gform-field-label--type-inline'>Asian<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_7_4'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_7' type='radio' value='Native Hawaiian or other Pacific Islander'  id='choice_183_7_4' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_7_4' id='label_183_7_4' class='gform-field-label gform-field-label--type-inline'>Native Hawaiian or other Pacific Islander<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_7_5'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_7' type='radio' value='Two or more races'  id='choice_183_7_5' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_7_5' id='label_183_7_5' class='gform-field-label gform-field-label--type-inline'>Two or more races<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_7_6'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_7' type='radio' value='Other'  id='choice_183_7_6' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_7_6' id='label_183_7_6' class='gform-field-label gform-field-label--type-inline'>Other<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_7_7'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_7' type='radio' value='Prefer not to disclose'  id='choice_183_7_7' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_7_7' id='label_183_7_7' class='gform-field-label gform-field-label--type-inline'>Prefer not to disclose<\/label>\n\t\t\t<\/div><\/div><\/div><\/fieldset><div id=\"field_183_16\" class=\"gfield gfield--type-html gfield--input-type-html gfield--width-full gfield_html gfield_html_formatted gfield_no_follows_desc field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><p>&nbsp;<\/p><\/div><fieldset id=\"field_183_8\" class=\"gfield gfield--type-radio gfield--type-choice gfield--input-type-radio gfield_contains_required field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><legend class='gfield_label gform-field-label' >Are you Hispanic\/Latino?<span class=\"gfield_required\"><span class=\"gfield_required gfield_required_text\">(Required)<\/span><\/span><\/legend><div class='ginput_container ginput_container_radio'><div class='gfield_radio' id='input_183_8'>\n\t\t\t<div class='gchoice gchoice_183_8_0'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_8' type='radio' value='Yes'  id='choice_183_8_0' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_8_0' id='label_183_8_0' class='gform-field-label gform-field-label--type-inline'>Yes<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_8_1'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_8' type='radio' value='No'  id='choice_183_8_1' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_8_1' id='label_183_8_1' class='gform-field-label gform-field-label--type-inline'>No<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_8_2'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_8' type='radio' value='Prefer not to disclose'  id='choice_183_8_2' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_8_2' id='label_183_8_2' class='gform-field-label gform-field-label--type-inline'>Prefer not to disclose<\/label>\n\t\t\t<\/div><\/div><\/div><\/fieldset><div id=\"field_183_15\" class=\"gfield gfield--type-html gfield--input-type-html gfield--width-full gfield_html gfield_html_formatted gfield_no_follows_desc field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><p>&nbsp;<\/p><\/div><fieldset id=\"field_183_9\" class=\"gfield gfield--type-radio gfield--type-choice gfield--input-type-radio gfield_contains_required field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><legend class='gfield_label gform-field-label' >With which gender do you primarily identify?<span class=\"gfield_required\"><span class=\"gfield_required gfield_required_text\">(Required)<\/span><\/span><\/legend><div class='ginput_container ginput_container_radio'><div class='gfield_radio' id='input_183_9'>\n\t\t\t<div class='gchoice gchoice_183_9_0'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_9' type='radio' value='Woman'  id='choice_183_9_0' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_9_0' id='label_183_9_0' class='gform-field-label gform-field-label--type-inline'>Woman<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_9_1'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_9' type='radio' value='Man'  id='choice_183_9_1' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_9_1' id='label_183_9_1' class='gform-field-label gform-field-label--type-inline'>Man<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_9_2'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_9' type='radio' value='Nonbinary\/third gender'  id='choice_183_9_2' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_9_2' id='label_183_9_2' class='gform-field-label gform-field-label--type-inline'>Nonbinary\/third gender<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_9_3'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_9' type='radio' value='Other'  id='choice_183_9_3' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_9_3' id='label_183_9_3' class='gform-field-label gform-field-label--type-inline'>Other<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_9_4'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_9' type='radio' value='Prefer not to disclose'  id='choice_183_9_4' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_9_4' id='label_183_9_4' class='gform-field-label gform-field-label--type-inline'>Prefer not to disclose<\/label>\n\t\t\t<\/div><\/div><\/div><\/fieldset><div id=\"field_183_22\" class=\"gfield gfield--type-html gfield--input-type-html gfield--width-full gfield_html gfield_html_formatted gfield_no_follows_desc field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><p>&nbsp;<\/p><\/div><fieldset id=\"field_183_23\" class=\"gfield gfield--type-radio gfield--type-choice gfield--input-type-radio gfield--width-full gfield_contains_required field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><legend class='gfield_label gform-field-label' >Are you a person with a disability?<span class=\"gfield_required\"><span class=\"gfield_required gfield_required_text\">(Required)<\/span><\/span><\/legend><div class='ginput_container ginput_container_radio'><div class='gfield_radio' id='input_183_23'>\n\t\t\t<div class='gchoice gchoice_183_23_0'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_23' type='radio' value='Yes'  id='choice_183_23_0' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_23_0' id='label_183_23_0' class='gform-field-label gform-field-label--type-inline'>Yes<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_23_1'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_23' type='radio' value='No'  id='choice_183_23_1' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_23_1' id='label_183_23_1' class='gform-field-label gform-field-label--type-inline'>No<\/label>\n\t\t\t<\/div>\n\t\t\t<div class='gchoice gchoice_183_23_2'>\n\t\t\t\t\t<input class='gfield-choice-input' name='input_23' type='radio' value='Prefer not to disclose'  id='choice_183_23_2' onchange='gformToggleRadioOther( this )'    \/>\n\t\t\t\t\t<label for='choice_183_23_2' id='label_183_23_2' class='gform-field-label gform-field-label--type-inline'>Prefer not to disclose<\/label>\n\t\t\t<\/div><\/div><\/div><\/fieldset><div id=\"field_183_14\" class=\"gfield gfield--type-html gfield--input-type-html gfield--width-full gfield_html gfield_html_formatted gfield_no_follows_desc field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><p>&nbsp;<\/p><\/div><div id=\"field_183_11\" class=\"gfield gfield--type-html gfield--input-type-html gfield--width-full gfield_html gfield_html_formatted gfield_no_follows_desc field_sublabel_below gfield--no-description field_description_below field_validation_below gfield_visibility_visible\"  ><strong>Do you now or have you ever identified with 2 or more of the following NIH categories?<\/strong><br>\n<ul><li>Were or currently are homeless, as defined by the McKinney-Vento Homeless Assistance Act<\/li>\n<li>Were or currently are in the foster care system, as defined by the Administration for Children and Families.<\/li>\n<li>Were eligible for the Federal Free and Reduced Lunch Program for two or more years<\/li>\n<li>Have\/had no parents or legal guardians who completed a bachelor\u2019s degree.<\/li>\n<li>Were or currently are eligible for Federal Pell grants<\/li>\n<li>Received 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